Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p18130 Brassica napus
A06p15440 Brassica napus
A07p40620 Brassica napus
Aa31LG7G13110 Aethionema arabicum
Aa31LG7G4010 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4500 Anthoceros agrestis
Actinidia12104 Actinidia chinensis
Actinidia15298 Actinidia chinensis
Actinidia22568 Actinidia chinensis
Ah.03g139700 Amaranthus hybridus
AL1G31900 Arabidopsis lyrata
AL2G34870 Arabidopsis lyrata
AL4G13800 Arabidopsis lyrata
Aqoxy5G01710 Aquilegia oxysepala
Aqoxy6G01006 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GU6A2U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P4T07M Arachis hypogaea
AT1G19310 Arabidopsis thaliana
AT1G74990 Arabidopsis thaliana
AT2G23780 Arabidopsis thaliana
ATR0598G319 Amborella trichopoda
ATR0680G199 Amborella trichopoda
ATR0733G137 Amborella trichopoda
Atru.chr13.552 Acer truncatum
Atru.chr3.505 Acer truncatum
AUR62008022 Chenopodium quinoa
BcaB06g27934 Brassica carinata
BcaB07g31965 Brassica carinata
BcaC02g08545 Brassica carinata
BcaC05g25856 Brassica carinata
BcaC08g46931 Brassica carinata
BcaC08g46958 Brassica carinata
BolC4t26871H Brassica oleracea
BolC5t30474H Brassica oleracea
BolC6t39936H Brassica oleracea
BraA04t17431Z Brassica rapa
BraA06t24657Z Brassica rapa
BraA07t31606Z Brassica rapa
C04p53140 Brassica napus
C05p17690 Brassica napus
C06p48990 Brassica napus
CAN.G836.1 Capsicum annuum
CAN.G93.23 Capsicum annuum
CANSAT01G2622 Cannabis sativa
CANSAT25G0879 Cannabis sativa
CARHR019900 Cardamine hirsuta
CARHR068300 Cardamine hirsuta
CARHR184810 Cardamine hirsuta
Carub.0001s1890 Capsella rubella
Carub.0002s2177 Capsella rubella
Carub.0004s0296 Capsella rubella
Ca_13334_v3 Cicer arietinum L.
Ca_24828_v3 Cicer arietinum L.
CBR_g44551 Chara braunii
Cc02_g17910 Coffea canephora
Cc07_g05160 Coffea canephora
Cc10_g03400 Coffea canephora
CDE02G3042 Ceratophyllum demersum
CDE02G3232 Ceratophyllum demersum
CDE06G0506 Ceratophyllum demersum
CDE07G0004 Ceratophyllum demersum
Cfa004259 Carpinus fangiana
Ciclev10002367m.g Citrus clementina
Ciclev10026329m.g Citrus clementina
CiPaw.01G032000 Carya illinoinensis
CiPaw.02G014800 Carya illinoinensis
CiPaw.15G072100 Carya illinoinensis
ClCG01G016230 Citrullus lanatus
ClCG08G015390 Citrullus lanatus
COL.COLO4_22146 Corchorus olitorius
COL.COLO4_26380 Corchorus olitorius
Cpa.g.sc51.131 Carica papaya
Cpa.g.sc62.106 Carica papaya
Cpa.g.sc64.44 Carica papaya
Cre17.g739100 Chlamydomonas reinhardtii
CsaV3_2G028400 Cucumis sativus L.
CsaV3_6G042520 Cucumis sativus L.
CSS0006012 Camellia sinensis var. sinensis
CSS0034911 Camellia sinensis var. sinensis
CSS0037682 Camellia sinensis var. sinensis
CSS0039802 Camellia sinensis var. sinensis
CSS0044579 Camellia sinensis var. sinensis
DCAR_010970 Daucus carota
DCAR_021733 Daucus carota
DCAR_022096 Daucus carota
Dinv23557 Davidia involucrata
Dinv36039 Davidia involucrata
Dinv39380 Davidia involucrata
Dinv39943 Davidia involucrata
Dinv42092 Davidia involucrata
Duzib041G0402 Durio zibethinus
Duzib093G2241 Durio zibethinus
Duzib116G0145 Durio zibethinus
Duzib147G1155 Durio zibethinus
Duzib187G1268 Durio zibethinus
Duzib264G1018 Durio zibethinus
ECA240G1563 Erigeron canadensis
ECA246G4426 Erigeron canadensis
ECA246G5300 Erigeron canadensis
ECA247G0403 Erigeron canadensis
EL10Ac6g14886 Beta vulgaris
Eucgr.A00486 Eucalyptus grandis
Eucgr.I02477 Eucalyptus grandis
FAN19G2335 Fragaria x ananassa
FAN23G0762 Fragaria x ananassa
FAN24G1910 Fragaria x ananassa
FAN26G1393 Fragaria x ananassa
FAN27G3046 Fragaria x ananassa
FAN28G2375 Fragaria x ananassa
FvH4_1g14110 Fragaria vesca
FvH4_2g07990 Fragaria vesca
FvH4_2g40351 Fragaria vesca
Glyma.01G178600 Glycine max
Glyma.04G034500 Glycine max
Glyma.06G034500 Glycine max
Glyma.11G063500 Glycine max
Gohir.A01G117400 Gossypium hirsutum
Gohir.A02G162800 Gossypium hirsutum
Gohir.A06G012300 Gossypium hirsutum
Gohir.A12G066200 Gossypium hirsutum
Gohir.D01G105700 Gossypium hirsutum
Gohir.D03G017500 Gossypium hirsutum
Gohir.D06G009700 Gossypium hirsutum
Gohir.D12G066600 Gossypium hirsutum
Gorai.002G129700 Gossypium raimondii
Gorai.003G017800 Gossypium raimondii
Gorai.008G069900 Gossypium raimondii
Gorai.010G012500 Gossypium raimondii
GSVIVG01009643001 Vitis vinifera
GSVIVG01019032001 Vitis vinifera
HanXRQChr02g0037551 Helianthus annuus
HanXRQChr04g0104551 Helianthus annuus
HanXRQChr05g0154151 Helianthus annuus
HanXRQChr05g0155861 Helianthus annuus
HanXRQChr08g0216561 Helianthus annuus
HanXRQChr12g0377131 Helianthus annuus
HanXRQChr17g0542551 Helianthus annuus
Haze_15142 Corylus avellana
Haze_17621 Corylus avellana
Haze_27229 Corylus avellana
Hma1.2p1_0066F.1_g036780 Hydrangea macrophylla
Hma1.2p1_0203F.1_g086750 Hydrangea macrophylla
Hma1.2p1_0382F.1_g140080 Hydrangea macrophylla
HPP92_000896 Vanilla planifolia
HPP92_015709 Vanilla planifolia
HPP92_026653 Vanilla planifolia
HPP92_027621 Vanilla planifolia
Lalb_Chr05g0213021 Lupinus albus
Lalb_Chr14g0369041 Lupinus albus
Lalb_Chr22g0355391 Lupinus albus
Lalb_Chr23g0266721 Lupinus albus
Lj2g0015558 Lotus japonicus
Lj4E783T0 Lonicera japonica
Lj4P132T23 Lonicera japonica
Lj5g0002007 Lotus japonicus
Lj5P201T16 Lonicera japonica
Lj7C13T0 Lonicera japonica
Lsat_1_v5_gn_1_18521 Lactuca sativa
Lsat_1_v5_gn_3_93260 Lactuca sativa
Lsat_1_v5_gn_3_99361 Lactuca sativa
Lsat_1_v5_gn_6_113401 Lactuca sativa
Manes.05G163900 Manihot esculenta
Manes.12G099100 Manihot esculenta
Manes.13G135600 Manihot esculenta
Manes.18G030200 Manihot esculenta
Mapoly0063s0084 Marchantia polymorpha
Mapoly0151s0032 Marchantia polymorpha
MBI16_g20733_MAGBIO Magnolia biondii
MBI16_g32008_MAGBIO Magnolia biondii
MBI19_g23210_MAGBIO Magnolia biondii
MBI19_g23212_MAGBIO Magnolia biondii
MBI19_g23214_MAGBIO Magnolia biondii
MCO02G436 Micromonas commoda
MD02G1155200 Malus domestica
MD08G1036700 Malus domestica
MD10G1082400 Malus domestica
Medtr1g021895 Medicago truncatula
Medtr1g054210 Medicago truncatula
Medtr2g090325 Medicago truncatula
Medtr5g019300 Medicago truncatula
MELO3C007493.2 Cucumis melo
MELO3C010916.2 Cucumis melo
Migut.B00269 Erythranthe guttata
Migut.C00681 Erythranthe guttata
MSTRG.23819 Avicennia marina
MSTRG.2932 Avicennia marina
MSTRG.3395 Avicennia marina
Nitab4.5_0000090g0240 Nicotiana tabacum
Nitab4.5_0001361g0140 Nicotiana tabacum
Nitab4.5_0001739g0070 Nicotiana tabacum
Nitab4.5_0002108g0040 Nicotiana tabacum
Nitab4.5_0004280g0150 Nicotiana tabacum
Nitab4.5_0004287g0040 Nicotiana tabacum
Nitab4.5_0005152g0100 Nicotiana tabacum
Nitab4.5_0005754g0010 Nicotiana tabacum
Nn1g05114 Nelumbo nucifera
Nn1g08808 Nelumbo nucifera
Nn5g29488 Nelumbo nucifera
Nn7g35994 Nelumbo nucifera
Oeu009603.2 Olea europaea
Oeu011849.1 Olea europaea
Oeu019086.2 Olea europaea
Oeu020772.1 Olea europaea
Oeu032888.1 Olea europaea
Oeu056201.1 Olea europaea
Os01g0766200 Oryza sativa ssp. japonica
Os03g0678400 Oryza sativa ssp. japonica
Os12g0636000 Oryza sativa ssp. japonica
Peaxi162Scf00019g00142 Petunia axillaris
Peaxi162Scf00019g00143 Petunia axillaris
Peaxi162Scf00019g00144 Petunia axillaris
Peaxi162Scf00535g00003 Petunia axillaris
Peaxi162Scf01070g00024 Petunia axillaris
Peaxi162Scf01340g00024 Petunia axillaris
PGR031G1985 Punica granatum
PGR102G0197 Punica granatum
PGSC0003DMG400001182 Solanum tuberosum
PGSC0003DMG400010089 Solanum tuberosum
PGSC0003DMG400025183 Solanum tuberosum
PGSC0003DMG400033908 Solanum tuberosum
Phvul.002G026100 Phaseolus vulgaris
Phvul.009G055700 Phaseolus vulgaris
Potri.002G133000 Populus trichocarpa
Potri.005G127900 Populus trichocarpa
Potri.007G031600 Populus trichocarpa
Potri.014G040400 Populus trichocarpa
Pp3c10_17530 Physcomitrium patens
Pp3c27_8350 Physcomitrium patens
Pp3c3_25900 Physcomitrium patens
Pp3c4_11250 Physcomitrium patens
Pp3c5_2730 Physcomitrium patens
PRCOL_00000382 Prasinoderma coloniale
PRCOL_00005814 Prasinoderma coloniale
Prupe.1G384000 Prunus persica
Prupe.2G137600 Prunus persica
Prupe.7G148100 Prunus persica
Psat0s10596g0040 Pisum sativum
Psat0s9457g0040 Pisum sativum
Psat2g161640 Pisum sativum
Psat2g161720 Pisum sativum
Psat2g161920 Pisum sativum
Psat6g032560 Pisum sativum
PSO170G6598 Papaver somniferum
PSO541G6345 Papaver somniferum
PSO675G2934 Papaver somniferum
PSO700G0353 Papaver somniferum
QL02p007320 Quercus lobata
QL06p044753 Quercus lobata
QL07p047649 Quercus lobata
QL07p047663 Quercus lobata
QL11p041842 Quercus lobata
QL11p041849 Quercus lobata
QL11p042291 Quercus lobata
QL11p042300 Quercus lobata
QL11p042308 Quercus lobata
RcHm_v2.0_Chr2g0102791 Rosa chinensis
RcHm_v2.0_Chr6g0262471 Rosa chinensis
RcHm_v2.0_Chr6g0300391 Rosa chinensis
Rhsim07G0235100 Rhododendron simsii
Rhsim11G0173200 Rhododendron simsii
Sabra02G0103900 Salix brachista
Sabra07G0027400 Salix brachista
Sabra14G0029500 Salix brachista
Sc03g0000980 Simmondsia chinensis
Sc15g0006780 Simmondsia chinensis
Sed0010082 Sechium edule
Sed0012366 Sechium edule
Sed0019455 Sechium edule
SEGI_07648 Sequoiadendron giganteum
SEGI_14037 Sequoiadendron giganteum
SGA_v2.0_scaffold14G07053 Striga asiatica
SGA_v2.0_scaffold15G07159 Striga asiatica
SGA_v2.0_scaffold32G13144 Striga asiatica
SHI08214 Sapria himalayana
SHI08709 Sapria himalayana
SMO263G0024 Selaginella moellendorffii
SMO358G0695 Selaginella moellendorffii
SMO367G0750 Selaginella moellendorffii
Solyc01g109340.4 Solanum lycopersicum
Solyc02g065540.3 Solanum lycopersicum
Solyc02g089870.3 Solanum lycopersicum
Solyc10g051270.2 Solanum lycopersicum
Sopen01g051530 Solanum pennellii
Sopen02g015740 Solanum pennellii
Sopen02g034560 Solanum pennellii
Sopen10g022970 Solanum pennellii
Sp1g17210 Schrenkiella parvula
Sp4g02720 Schrenkiella parvula
Sp5g30120 Schrenkiella parvula
TAR381G0092 Trochodendron aralioides
TAR625G1459 Trochodendron aralioides
TAR628G1352 Trochodendron aralioides
THA.LOC104804223 Tarenaya hassleriana
THA.LOC104807559 Tarenaya hassleriana
THA.LOC104809055 Tarenaya hassleriana
Thecc.01G042400 Theobroma cacao
Thecc.08G021700 Theobroma cacao
Thhalv10000313m.g Eutrema salsugineum
Thhalv10008430m.g Eutrema salsugineum
Thhalv10019588m.g Eutrema salsugineum
TPR.G10607 Trifolium pratense
TPR.G15735 Trifolium pratense
TPR.G23214 Trifolium pratense
TWI09G0631 Tripterygium wilfordii
TWI12G0515 Tripterygium wilfordii
TWI53G0975 Tripterygium wilfordii
TWI56G0222 Tripterygium wilfordii
unitig_52.g17621 Utricularia gibba
unitig_578.g16720 Utricularia gibba
unitig_85.g27231 Utricularia gibba
vmacro04498 Vaccinium macrocarpon
VMungo1215G2019 Vigna mungo
VMungo1309G1377 Vigna mungo
Zm00001eb025340 Zea mays
Zm00001eb032800 Zea mays
Zm00001eb051980 Zea mays
Zm00001eb152120 Zea mays
Zm00001eb217370 Zea mays
Zm00001eb370210 Zea mays

User provided reference genes

Program Settings