Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p14130 Brassica napus
A03p06210 Brassica napus
A03p29500 Brassica napus
A03p53870 Brassica napus
A09p27190 Brassica napus
Aa31LG6G4980 Aethionema arabicum
Aa31LG9G10540 Aethionema arabicum
Aa31sc24G150 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.32 Anthoceros agrestis
Actinidia02938 Actinidia chinensis
Actinidia05235 Actinidia chinensis
Actinidia27415 Actinidia chinensis
Ah.02g116350 Amaranthus hybridus
AL6G24470 Arabidopsis lyrata
AL6G46660 Arabidopsis lyrata
AL7G30610 Arabidopsis lyrata
Aqoxy1G03191 Aquilegia oxysepala
Aqoxy2G02254 Aquilegia oxysepala
Aqoxy7G00501 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AZRX94 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DMG9X5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IRWE1Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KFRN4K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5P6ZA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V9KPM0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZG82L4 Arachis hypogaea
AT4G11920 Arabidopsis thaliana
AT4G22910 Arabidopsis thaliana
AT5G13840 Arabidopsis thaliana
ATR0559G299 Amborella trichopoda
ATR0789G084 Amborella trichopoda
Atru.chr12.421 Acer truncatum
Atru.chr9.1504 Acer truncatum
AUR62010567 Chenopodium quinoa
AUR62012111 Chenopodium quinoa
AUR62017320 Chenopodium quinoa
AUR62035694 Chenopodium quinoa
AUR62039360 Chenopodium quinoa
BcaB01g01693 Brassica carinata
BcaB01g02663 Brassica carinata
BcaB01g05333 Brassica carinata
BcaC01g04614 Brassica carinata
BcaC02g11561 Brassica carinata
BcaC03g13844 Brassica carinata
BcaC04g21178 Brassica carinata
BcaC04g21180 Brassica carinata
BcaC09g51063 Brassica carinata
BcaNung01017 Brassica carinata
BcaNung01661 Brassica carinata
BolC1t01676H Brassica oleracea
BolC3t13223H Brassica oleracea
BolC3t15759H Brassica oleracea
BolC3t15879H Brassica oleracea
BolC7t45721H Brassica oleracea
BolC9t56295H Brassica oleracea
BraA01t01361Z Brassica rapa
BraA03t09955Z Brassica rapa
BraA03t12144Z Brassica rapa
BraA03t14456Z Brassica rapa
BraA09t38288Z Brassica rapa
C01p17390 Brassica napus
C03p07220 Brassica napus
C03p35700 Brassica napus
C05p50110 Brassica napus
C07p52270 Brassica napus
C09p34510 Brassica napus
CANSAT21G0273 Cannabis sativa
CANSAT56G0656 Cannabis sativa
CANSAT56G3034 Cannabis sativa
CARHR199590 Cardamine hirsuta
CARHR229950 Cardamine hirsuta
CARHR254350 Cardamine hirsuta
Carub.0006s1203 Capsella rubella
Carub.0006s3103 Capsella rubella
Carub.0007s1837 Capsella rubella
Ca_08170_v3 Cicer arietinum L.
Ca_17112_v3 Cicer arietinum L.
Ca_20238_v3 Cicer arietinum L.
CBR_g38006 Chara braunii
Cc02_g07630 Coffea canephora
Cc08_g13760 Coffea canephora
CDE04G0497 Ceratophyllum demersum
CDE04G3065 Ceratophyllum demersum
CDE07G0041 Ceratophyllum demersum
CDE07G1168 Ceratophyllum demersum
CDE07G1487 Ceratophyllum demersum
CDE12G0828 Ceratophyllum demersum
Cfa001455 Carpinus fangiana
Cfa012074 Carpinus fangiana
Cfa012075 Carpinus fangiana
Cfa022344 Carpinus fangiana
Cfa025519 Carpinus fangiana
Ciclev10019996m.g Citrus clementina
Ciclev10031523m.g Citrus clementina
CiPaw.01G289100 Carya illinoinensis
CiPaw.11G143000 Carya illinoinensis
CiPaw.12G100600 Carya illinoinensis
ClCG01G003300 Citrullus lanatus
ClCG09G019620 Citrullus lanatus
COL.COLO4_15081 Corchorus olitorius
COL.COLO4_23796 Corchorus olitorius
Cpa.g.sc1.424 Carica papaya
Cpa.g.sc29.37 Carica papaya
Cre09.g406851 Chlamydomonas reinhardtii
CsaV3_5G003380 Cucumis sativus L.
CsaV3_5G026770 Cucumis sativus L.
CSS0019976 Camellia sinensis var. sinensis
CSS0040332 Camellia sinensis var. sinensis
DCAR_011716 Daucus carota
Dinv26031 Davidia involucrata
Dinv37706 Davidia involucrata
Dinv39036 Davidia involucrata
Duzib068G0104 Durio zibethinus
Duzib084G0574 Durio zibethinus
Duzib114G0379 Durio zibethinus
Duzib205G0865 Durio zibethinus
ECA232G1521 Erigeron canadensis
ECA240G0656 Erigeron canadensis
EL10Ac2g04729 Beta vulgaris
EL10Ac5g11973 Beta vulgaris
EL10Ac5g12704 Beta vulgaris
Eucgr.D01940 Eucalyptus grandis
Eucgr.G02943 Eucalyptus grandis
FAN01G1713 Fragaria x ananassa
FAN03G0292 Fragaria x ananassa
FAN03G2826 Fragaria x ananassa
FAN04G1646 Fragaria x ananassa
FAN06G0863 Fragaria x ananassa
FAN06G1060 Fragaria x ananassa
FAN06G2215 Fragaria x ananassa
FAN06G4036 Fragaria x ananassa
FAN08G3542 Fragaria x ananassa
FAN13G3226 Fragaria x ananassa
FAN18G0856 Fragaria x ananassa
FvH4_5g01220 Fragaria vesca
FvH4_7g22780 Fragaria vesca
Glyma.01G214500 Glycine max
Glyma.05G051100 Glycine max
Glyma.11G027500 Glycine max
Glyma.11G219600 Glycine max
Glyma.17G133000 Glycine max
Glyma.18G037800 Glycine max
Gohir.A08G177200 Gossypium hirsutum
Gohir.A09G193600 Gossypium hirsutum
Gohir.A10G220700 Gossypium hirsutum
Gohir.A12G223800 Gossypium hirsutum
Gohir.D06G177950 Gossypium hirsutum
Gohir.D08G195600 Gossypium hirsutum
Gohir.D09G187800 Gossypium hirsutum
Gohir.D10G232900 Gossypium hirsutum
Gohir.D12G226400 Gossypium hirsutum
Gorai.004G206300 Gossypium raimondii
Gorai.006G210600 Gossypium raimondii
Gorai.008G242400 Gossypium raimondii
Gorai.011G266300 Gossypium raimondii
Gorai.N007300 Gossypium raimondii
GSVIVG01016518001 Vitis vinifera
GSVIVG01019887001 Vitis vinifera
HanXRQChr03g0084091 Helianthus annuus
HanXRQChr09g0249971 Helianthus annuus
Haze_08984 Corylus avellana
Haze_08985 Corylus avellana
Haze_17086 Corylus avellana
Haze_27050 Corylus avellana
Hma1.2p1_0138F.1_g062760 Hydrangea macrophylla
HPP92_001755 Vanilla planifolia
HPP92_019837 Vanilla planifolia
Hund11540 Selenicereus undatus
Hund13779 Selenicereus undatus
Hund14705 Selenicereus undatus
Lalb_Chr05g0214721 Lupinus albus
Lalb_Chr09g0324661 Lupinus albus
Lalb_Chr09g0324671 Lupinus albus
Lalb_Chr10g0104611 Lupinus albus
Lalb_Chr16g0379921 Lupinus albus
Lalb_Chr16g0389711 Lupinus albus
Lalb_Chr17g0346261 Lupinus albus
Lj1A939T58 Lonicera japonica
Lj2A202G53 Lonicera japonica
Lj2g0010929 Lotus japonicus
Lj4g0013325 Lotus japonicus
Lj6g0013593 Lotus japonicus
Lsat_1_v5_gn_6_79080 Lactuca sativa
Lsat_1_v5_gn_6_8280 Lactuca sativa
Lsat_1_v5_gn_9_65820 Lactuca sativa
Manes.01G069800 Manihot esculenta
Manes.02G029900 Manihot esculenta
Manes.07G117500 Manihot esculenta
Mapoly0003s0303 Marchantia polymorpha
MBI11_g43875_MAGBIO Magnolia biondii
MCO16G011 Micromonas commoda
MD00G1131600 Malus domestica
MD01G1136000 Malus domestica
MD04G1070400 Malus domestica
MD07G1200700 Malus domestica
MD09G1224400 Malus domestica
MD11G1180200 Malus domestica
MD13G1123600 Malus domestica
Medtr1g049000 Medicago truncatula
Medtr3g067940 Medicago truncatula
Medtr4g102510 Medicago truncatula
MELO3C005615.2 Cucumis melo
MELO3C021617.2 Cucumis melo
Migut.E01179 Erythranthe guttata
Migut.E01273 Erythranthe guttata
Migut.F01455 Erythranthe guttata
MSTRG.1908 Avicennia marina
MSTRG.8258 Avicennia marina
Nitab4.5_0000004g0100 Nicotiana tabacum
Nitab4.5_0000140g0090 Nicotiana tabacum
Nitab4.5_0001714g0020 Nicotiana tabacum
Nitab4.5_0004559g0010 Nicotiana tabacum
Nitab4.5_0010544g0010 Nicotiana tabacum
Nitab4.5_0011435g0020 Nicotiana tabacum
Nn1g01280 Nelumbo nucifera
Nn2g13393 Nelumbo nucifera
Nn6g34323 Nelumbo nucifera
Oeu016530.1 Olea europaea
Oeu022437.1 Olea europaea
Oeu048764.1 Olea europaea
Oeu059048.1 Olea europaea
Os01g0972900 Oryza sativa ssp. japonica
Os03g0123300 Oryza sativa ssp. japonica
Peaxi162Scf00620g00621 Petunia axillaris
Peaxi162Scf00658g00836 Petunia axillaris
PGR031G3305 Punica granatum
PGR142G1904 Punica granatum
PGSC0003DMG400010792 Solanum tuberosum
PGSC0003DMG400022734 Solanum tuberosum
PGSC0003DMG400029675 Solanum tuberosum
Phvul.001G232800 Phaseolus vulgaris
Phvul.002G153000 Phaseolus vulgaris
Phvul.003G213700 Phaseolus vulgaris
Potri.001G112700 Populus trichocarpa
Potri.003G119500 Populus trichocarpa
Potri.008G057500 Populus trichocarpa
Potri.010G202100 Populus trichocarpa
Pp3c10_18160 Physcomitrium patens
Pp3c12_23740 Physcomitrium patens
Pp3c3_34000 Physcomitrium patens
Pp3c4_1710 Physcomitrium patens
Pp3c8_3470 Physcomitrium patens
Prupe.2G237500 Prunus persica
Prupe.5G087300 Prunus persica
Psat0s3705g0040 Pisum sativum
Psat5g123080 Pisum sativum
Psat7g137000 Pisum sativum
PSO063G1980 Papaver somniferum
PSO339G0287 Papaver somniferum
PSO339G6122 Papaver somniferum
PSO478G5137 Papaver somniferum
PSO513G0155 Papaver somniferum
PSO782G0129 Papaver somniferum
QL02p064942 Quercus lobata
QL08p040649 Quercus lobata
QL08p059468 Quercus lobata
RcHm_v2.0_Chr1g0367881 Rosa chinensis
RcHm_v2.0_Chr7g0199871 Rosa chinensis
Rhsim03G0133000 Rhododendron simsii
Rhsim07G0096300 Rhododendron simsii
Sabra01G0086100 Salix brachista
Sabra03G0083500 Salix brachista
Sabra08G0042000 Salix brachista
Sabra10G0156000 Salix brachista
SalBow1G6604 Salvia bowleyana
SalBow6G1558 Salvia bowleyana
SalBow6G5721 Salvia bowleyana
Sc01g0008890 Simmondsia chinensis
Sc10g0001680 Simmondsia chinensis
Sed0012830 Sechium edule
Sed0013240 Sechium edule
Sed0022284 Sechium edule
SEGI_02354 Sequoiadendron giganteum
SEGI_11735 Sequoiadendron giganteum
SGA_v2.0_scaffold144G35981 Striga asiatica
SGA_v2.0_scaffold221G42677 Striga asiatica
SGA_v2.0_scaffold2G01015 Striga asiatica
SHI29904 Sapria himalayana
SHI30754 Sapria himalayana
SMO347G0665 Selaginella moellendorffii
SMO361G0528 Selaginella moellendorffii
Solyc06g043150.4 Solanum lycopersicum
Solyc08g080080.4 Solanum lycopersicum
Solyc12g056490.1 Solanum lycopersicum
Sopen06g013610 Solanum pennellii
Sopen08g028430 Solanum pennellii
Sopen11g013270 Solanum pennellii
Sopen12g029080 Solanum pennellii
Sp6g05570 Schrenkiella parvula
Sp6g30160 Schrenkiella parvula
Sp7g20980 Schrenkiella parvula
TAR369G0222 Trochodendron aralioides
TAR369G0948 Trochodendron aralioides
TAR374G0793 Trochodendron aralioides
TAR374G1007 Trochodendron aralioides
TAR622G0075 Trochodendron aralioides
TAR623G0465 Trochodendron aralioides
TAR627G0104 Trochodendron aralioides
THA.LOC104799338 Tarenaya hassleriana
THA.LOC104809907 Tarenaya hassleriana
THA.LOC104813009 Tarenaya hassleriana
THA.LOC104814142 Tarenaya hassleriana
Thecc.03G268200 Theobroma cacao
Thecc.10G036500 Theobroma cacao
Thhalv10013409m.g Eutrema salsugineum
Thhalv10025096m.g Eutrema salsugineum
Thhalv10028629m.g Eutrema salsugineum
TPR.G15823 Trifolium pratense
TPR.G40606 Trifolium pratense
TWI15G0603 Tripterygium wilfordii
TWI15G1202 Tripterygium wilfordii
TWI38G0563 Tripterygium wilfordii
TWI60G1164 Tripterygium wilfordii
unitig_0.g1022 Utricularia gibba
unitig_26.g9263 Utricularia gibba
unitig_749.g14311 Utricularia gibba
vmacro14014 Vaccinium macrocarpon
VMungo1215G0574 Vigna mungo
VMungo1215G1676 Vigna mungo
VMungo1383G2885 Vigna mungo
Zm00001eb001710 Zea mays
Zm00001eb139790 Zea mays
Zm00001eb403730 Zea mays

User provided reference genes

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