Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p13400 Brassica napus
A03p38220 Brassica napus
A05p17450 Brassica napus
A07p12820 Brassica napus
A08p00630 Brassica napus
Aa31LG10G760 Aethionema arabicum
Aa31LG7G8760 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2749 Anthoceros agrestis
Actinidia00908 Actinidia chinensis
Actinidia16236 Actinidia chinensis
Actinidia30178 Actinidia chinensis
Actinidia32421 Actinidia chinensis
Actinidia39144 Actinidia chinensis
Ah.01g005670 Amaranthus hybridus
Ah.04g153840 Amaranthus hybridus
Ah.08g218080 Amaranthus hybridus
Ah.13g073610 Amaranthus hybridus
Ah.13g073650 Amaranthus hybridus
Ah.13g078020 Amaranthus hybridus
AL1G39500 Arabidopsis lyrata
AL1G63510 Arabidopsis lyrata
AL3G25380 Arabidopsis lyrata
AL8G32260 Arabidopsis lyrata
Aqoxy3G00586_Aqoxy3G00587 Aquilegia oxysepala
Aqoxy7G03904 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.50GMPE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DE6SJA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E0G2VY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G51Q6K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NV1NE1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QWM91M Arachis hypogaea
AT1G26230 Arabidopsis thaliana
AT1G55490 Arabidopsis thaliana
AT3G13470 Arabidopsis thaliana
AT5G56500 Arabidopsis thaliana
ATR0317G042 Amborella trichopoda
ATR0691G214 Amborella trichopoda
Atru.chr11.1509 Acer truncatum
Atru.chr11.1511 Acer truncatum
Atru.chr3.2098 Acer truncatum
Atru.chr3.2389 Acer truncatum
AUR62001281 Chenopodium quinoa
AUR62018567 Chenopodium quinoa
AUR62020851 Chenopodium quinoa
AUR62022174 Chenopodium quinoa
AUR62025725 Chenopodium quinoa
AUR62031879 Chenopodium quinoa
BcaB01g04403 Brassica carinata
BcaB02g10819 Brassica carinata
BcaB03g14060 Brassica carinata
BcaB04g16955 Brassica carinata
BcaB04g18762 Brassica carinata
BcaB07g33211 Brassica carinata
BcaC01g01529 Brassica carinata
BcaC01g03992 Brassica carinata
BcaC01g06428 Brassica carinata
BcaC04g20083 Brassica carinata
BcaC06g35163 Brassica carinata
BcaC08g44200 Brassica carinata
BolC3t14000H Brassica oleracea
BolC3t16907H Brassica oleracea
BolC3t21587H Brassica oleracea
BolC6t36807H Brassica oleracea
BolC7t42431H Brassica oleracea
BolC9t57657H Brassica oleracea
BraA03t10646Z Brassica rapa
BraA03t12975Z Brassica rapa
BraA05t20640Z Brassica rapa
BraA07t29058Z Brassica rapa
BraA08t32121Z Brassica rapa
C03p15660 Brassica napus
C03p46390 Brassica napus
C03p46420 Brassica napus
C03p92810 Brassica napus
C06p16080 Brassica napus
C07p19210 Brassica napus
C09p48090 Brassica napus
CAN.G184.12 Capsicum annuum
CAN.G270.13 Capsicum annuum
CAN.G438.7 Capsicum annuum
CANSAT11G1426 Cannabis sativa
CANSAT35G0545 Cannabis sativa
CARHR025680 Cardamine hirsuta
CARHR045160 Cardamine hirsuta
CARHR088130 Cardamine hirsuta
CARHR270140 Cardamine hirsuta
Carub.0001s2472 Capsella rubella
Carub.0001s4398 Capsella rubella
Carub.0003s1293 Capsella rubella
Carub.0008s1698 Capsella rubella
Ca_03458_v3 Cicer arietinum L.
Ca_05158_v3 Cicer arietinum L.
Ca_06983_v3 Cicer arietinum L.
CBR_g23148 Chara braunii
CBR_g8922 Chara braunii
Cc01_g00200 Coffea canephora
Cc04_g02750 Coffea canephora
Cc11_g11280 Coffea canephora
CDE01G0828 Ceratophyllum demersum
CDE05G1938 Ceratophyllum demersum
CDE11G1193 Ceratophyllum demersum
CDE12G0519 Ceratophyllum demersum
Cfa000490 Carpinus fangiana
Cfa008821 Carpinus fangiana
Cfa009549 Carpinus fangiana
Ciclev10014640m.g Citrus clementina
Ciclev10031053m.g Citrus clementina
CiPaw.05G119400 Carya illinoinensis
CiPaw.13G177900 Carya illinoinensis
ClCG03G014590 Citrullus lanatus
ClCG05G023380 Citrullus lanatus
COL.COLO4_07520 Corchorus olitorius
COL.COLO4_27758 Corchorus olitorius
COL.COLO4_30478 Corchorus olitorius
Cpa.g.sc161.12 Carica papaya
Cpa.g.sc53.5 Carica papaya
Cre07.g339150 Chlamydomonas reinhardtii
Cre17.g741450 Chlamydomonas reinhardtii
CsaV3_1G041580 Cucumis sativus L.
CsaV3_5G033630 Cucumis sativus L.
CSS0003881 Camellia sinensis var. sinensis
CSS0024583 Camellia sinensis var. sinensis
CSS0036200 Camellia sinensis var. sinensis
CSS0041773 Camellia sinensis var. sinensis
DCAR_001968 Daucus carota
DCAR_016198 Daucus carota
DCAR_026693 Daucus carota
Dinv13481 Davidia involucrata
Dinv16574 Davidia involucrata
Dinv37997 Davidia involucrata
Duzib114G0138 Durio zibethinus
Duzib114G0988 Durio zibethinus
Duzib160G0145 Durio zibethinus
Duzib251G0853 Durio zibethinus
Duzib268G1253 Durio zibethinus
ECA232G5021 Erigeron canadensis
ECA233G0264 Erigeron canadensis
ECA234G3680 Erigeron canadensis
ECA238G0215 Erigeron canadensis
EL10Ac3g05595 Beta vulgaris
EL10Ac7g18077 Beta vulgaris
EL10Ac9g22105 Beta vulgaris
Eucgr.B03593 Eucalyptus grandis
Eucgr.G02400 Eucalyptus grandis
FAN07G1307 Fragaria x ananassa
FAN11G1770 Fragaria x ananassa
FAN12G1970 Fragaria x ananassa
FAN16G2195 Fragaria x ananassa
FAN17G2244 Fragaria x ananassa
FAN21G1868 Fragaria x ananassa
FAN22G0773 Fragaria x ananassa
FAN25G1575 Fragaria x ananassa
FvH4_3g45800 Fragaria vesca
FvH4_4g28740 Fragaria vesca
Glyma.01G069500 Glycine max
Glyma.02G126300 Glycine max
Glyma.08G175900 Glycine max
Glyma.15G250500 Glycine max
Gohir.A05G128400 Gossypium hirsutum
Gohir.A10G192400 Gossypium hirsutum
Gohir.A13G092900 Gossypium hirsutum
Gohir.D05G132900 Gossypium hirsutum
Gohir.D10G200300 Gossypium hirsutum
Gohir.D13G099600 Gossypium hirsutum
Gorai.001G250800 Gossypium raimondii
Gorai.009G136600 Gossypium raimondii
Gorai.011G224500 Gossypium raimondii
GSVIVG01010149001 Vitis vinifera
GSVIVG01017032001 Vitis vinifera
GSVIVG01025490001 Vitis vinifera
HanXRQChr03g0092611 Helianthus annuus
HanXRQChr10g0313581 Helianthus annuus
HanXRQChr12g0364551 Helianthus annuus
HanXRQChr14g0437191 Helianthus annuus
Haze_06425 Corylus avellana
Haze_11833 Corylus avellana
Haze_22933 Corylus avellana
Hma1.2p1_0589F.1_g184800 Hydrangea macrophylla
Hma1.2p1_0762F.1_g214410 Hydrangea macrophylla
HPP92_014705 Vanilla planifolia
HPP92_014743 Vanilla planifolia
HPP92_014746 Vanilla planifolia
HPP92_020880 Vanilla planifolia
HPP92_020886 Vanilla planifolia
Hund05649 Selenicereus undatus
Hund06651 Selenicereus undatus
Hund21042 Selenicereus undatus
Hund21044 Selenicereus undatus
Lalb_Chr01g0016031 Lupinus albus
Lalb_Chr17g0341631 Lupinus albus
Lalb_Chr20g0108871 Lupinus albus
Lalb_Chr25g0285341 Lupinus albus
Lj2g0002855 Lotus japonicus
Lj3A1024T77 Lonicera japonica
Lj3g0023835 Lotus japonicus
Lj4A831G74 Lonicera japonica
Lj8C550T7 Lonicera japonica
Lsat_1_v5_gn_2_50361 Lactuca sativa
Lsat_1_v5_gn_5_134540 Lactuca sativa
Lsat_1_v5_gn_8_37600 Lactuca sativa
Manes.03G086700 Manihot esculenta
Manes.14G092800 Manihot esculenta
Manes.15G110300 Manihot esculenta
Mapoly0001s0499 Marchantia polymorpha
MBI01_g33726_MAGBIO Magnolia biondii
MBI01_g37443_MAGBIO Magnolia biondii
MCO11G384 Micromonas commoda
MD03G1002900 Malus domestica
MD11G1002700 Malus domestica
MD13G1053600 Malus domestica
Medtr1g017380 Medicago truncatula
Medtr1g017390 Medicago truncatula
MELO3C012180.2 Cucumis melo
MELO3C015568.2 Cucumis melo
Migut.L01137 Erythranthe guttata
Migut.N00541 Erythranthe guttata
MSTRG.12801 Avicennia marina
MSTRG.18029 Avicennia marina
MSTRG.7712 Avicennia marina
Nitab4.5_0000027g0560 Nicotiana tabacum
Nitab4.5_0000253g0120 Nicotiana tabacum
Nitab4.5_0001755g0080 Nicotiana tabacum
Nitab4.5_0003167g0030 Nicotiana tabacum
Nitab4.5_0006272g0020 Nicotiana tabacum
Nitab4.5_0006538g0070 Nicotiana tabacum
Nn1g09781 Nelumbo nucifera
Nn2g11623 Nelumbo nucifera
Nn3g17598 Nelumbo nucifera
Nn8g39128 Nelumbo nucifera
Oeu024079.1 Olea europaea
Oeu033526.1 Olea europaea
Oeu054581.1 Olea europaea
Oeu060892.1 Olea europaea
Os02g0102900 Oryza sativa ssp. japonica
Os04g0443900 Oryza sativa ssp. japonica
Os06g0114000 Oryza sativa ssp. japonica
Peaxi162Scf00038g00838 Petunia axillaris
Peaxi162Scf00188g00627 Petunia axillaris
Peaxi162Scf00200g00419 Petunia axillaris
PGR102G3215 Punica granatum
PGR119G1619 Punica granatum
PGR119G2340 Punica granatum
PGSC0003DMG400002537 Solanum tuberosum
PGSC0003DMG400024011 Solanum tuberosum
PGSC0003DMG400025122 Solanum tuberosum
Phvul.005G051700 Phaseolus vulgaris
Phvul.006G034900 Phaseolus vulgaris
Potri.001G002500 Populus trichocarpa
Potri.003G222400 Populus trichocarpa
Potri.010G135100 Populus trichocarpa
Pp3c16_4660 Physcomitrium patens
Pp3c27_5110 Physcomitrium patens
Pp3c6_20400 Physcomitrium patens
PRCOL_00006934 Prasinoderma coloniale
Prupe.1G298500 Prunus persica
Prupe.6G002500 Prunus persica
Psat1g001680 Pisum sativum
Psat2g080360 Pisum sativum
Psat6g016920 Pisum sativum
PSO173G0144 Papaver somniferum
PSO566G0025 Papaver somniferum
PSO675G5862 Papaver somniferum
QL01p010624 Quercus lobata
QL03p047443 Quercus lobata
QL07p024952 Quercus lobata
QL08p009880 Quercus lobata
RcHm_v2.0_Chr4g0436871 Rosa chinensis
RcHm_v2.0_Chr5g0083881 Rosa chinensis
Rhsim09G0117900 Rhododendron simsii
Rhsim12G0202100 Rhododendron simsii
Sabra01G0001800 Salix brachista
Sabra03G0165400 Salix brachista
Sabra10G0103700 Salix brachista
SalBow3G0279 Salvia bowleyana
SalBow7G3713 Salvia bowleyana
SalBow8G3362 Salvia bowleyana
SalBow8G3595 Salvia bowleyana
Sc11g0009400 Simmondsia chinensis
Sc12g0009590 Simmondsia chinensis
Sed0002818 Sechium edule
Sed0021995 Sechium edule
Sed0023320 Sechium edule
SEGI_25698 Sequoiadendron giganteum
SGA_v2.0_scaffold3G01682 Striga asiatica
SGA_v2.0_scaffold6G03315 Striga asiatica
SHI31308 Sapria himalayana
SHI32987 Sapria himalayana
SHI45123 Sapria himalayana
SHI46697 Sapria himalayana
SHI49169 Sapria himalayana
SHI50336 Sapria himalayana
SHI51060 Sapria himalayana
SHI51831 Sapria himalayana
SHI52732 Sapria himalayana
SMO347G0510 Selaginella moellendorffii
SMO364G0145 Selaginella moellendorffii
Solyc01g028810.3 Solanum lycopersicum
Solyc03g120850.4 Solanum lycopersicum
Solyc05g010240.4 Solanum lycopersicum
Sopen01g016850 Solanum pennellii
Sopen03g039670 Solanum pennellii
Sopen05g006000 Solanum pennellii
Sp1g22430 Schrenkiella parvula
Sp1g41100 Schrenkiella parvula
Sp3g11680 Schrenkiella parvula
Sp6g18300 Schrenkiella parvula
TAR369G0364 Trochodendron aralioides
TAR371G0643 Trochodendron aralioides
THA.LOC104811719 Tarenaya hassleriana
THA.LOC104822700 Tarenaya hassleriana
Thecc.02G318400 Theobroma cacao
Thecc.06G096800 Theobroma cacao
Thecc.09G203400 Theobroma cacao
Thhalv10007125m.g Eutrema salsugineum
Thhalv10011330m.g Eutrema salsugineum
Thhalv10013030m.g Eutrema salsugineum
Thhalv10020346m.g Eutrema salsugineum
TPR.G12985 Trifolium pratense
TPR.G2660 Trifolium pratense
TPR.G29760 Trifolium pratense
TWI32G0362 Tripterygium wilfordii
TWI34G1642 Tripterygium wilfordii
TWI60G0468 Tripterygium wilfordii
TWI79G0284 Tripterygium wilfordii
unitig_62.g23535 Utricularia gibba
vmacro08105 Vaccinium macrocarpon
vmacro10452 Vaccinium macrocarpon
vmacro16983 Vaccinium macrocarpon
vmacro22450 Vaccinium macrocarpon
vmacro23241 Vaccinium macrocarpon
VMungo0540G1388 Vigna mungo
VMungo1080G0399 Vigna mungo
Zm00001eb010540 Zea mays
Zm00001eb209960 Zea mays
Zm00001eb250320 Zea mays
Zm00001eb268910 Zea mays
Zm00001eb378930 Zea mays

User provided reference genes

Program Settings