Gene: AT1G55490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G55490
  • Transcript Identifier AT1G55490.5
  • Gene Type Coding gene
  • Location Chr1 : 20715717-20718673 : negative

Gene Family Information

  • ID HOM05D000415
  • #Genes/#Species 1224/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G55490.5
  • symbol CPN60B
  • Alias Cpn60beta1,chaperonin-60beta1,LEN1,LESION INITIATION 1
  • uniprot P21240

Descriptions

  • Description chaperonin 60 beta
  • Computational description chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051085
IDA
IBA
Gene Ontologychaperone cofactor-dependent protein refolding1 2
GO:0006457
IEA
GOA Databaseprotein folding
GO:0006457
IBA
TAS
Gene Ontologyprotein folding2
GO:0042026
IEA
Gene Ontologyprotein refolding
GO:0042026
IEA
InterProprotein refolding
GO:0009409
IEP
Gene Ontologyresponse to cold3
GO:0008219
IMP
Gene Ontologycell death1
GO:0009627
IMP
Gene Ontologysystemic acquired resistance1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019904
IPI
GOA Databaseprotein domain specific binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0003729
IDA
Gene OntologymRNA binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
IBA
Gene Ontologycytosolic ribosome2 6
GO:0009570
IDA
IEA
GOA Databasechloroplast stroma
GO:0009570
HDA
IBA
Gene Ontologychloroplast stroma2 7
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope8
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
NAS
Gene Ontologychloroplast9 10
GO:0048046
IDA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast11
GO:0009536
IEA
GOA Databaseplastid
GO:0010319
IDA
Gene Ontologystromule3
GO:0005829
RCA
Gene Ontologycytosol12
GO:0005794
RCA
Gene OntologyGolgi apparatus13
GO:0005634
HDA
Gene Ontologynucleus14

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027410 TCP-1-like chaperonin intermediate domain superfamily
IPR027409 GroEL-like apical domain superfamily
IPR001844 Chaperonin Cpn60
IPR002423 Chaperonin Cpn60/TCP-1 family
IPR027413 GroEL-like equatorial domain superfamily
Mapman id Description
1.1.8.1.6.2.2 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance.Cpn60 chaperonin heterodimer.subunit beta
1.2.1.2.1.2 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.CPN60 chaperonin heterodimer.subunit beta
19.1.7.1 Protein homeostasis.protein quality control.Hsp60 chaperone system.chaperone (Hsp60)