Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p11520 Brassica napus
A06p46760 Brassica napus
A09p21590 Brassica napus
Aa31LG6G2180 Aethionema arabicum
Aa31LG9G7990 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.314 Anthoceros agrestis
Actinidia01805 Actinidia chinensis
Actinidia17156 Actinidia chinensis
Actinidia20351 Actinidia chinensis
Actinidia28773 Actinidia chinensis
Actinidia32684 Actinidia chinensis
Actinidia32752 Actinidia chinensis
Actinidia35703 Actinidia chinensis
Ah.04g162930 Amaranthus hybridus
Ah.06g191510 Amaranthus hybridus
Ah.09g227930 Amaranthus hybridus
AL1G26990 Arabidopsis lyrata
AL1G67490 Arabidopsis lyrata
AL7G34420 Arabidopsis lyrata
AL8G14070 Arabidopsis lyrata
Aqoxy3G04172 Aquilegia oxysepala
Aqoxy7G01691 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.460FH3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.55PVYA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ABCB5A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BC5M5S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F4PRN6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FX5SIN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G34P0I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G3HLZ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IC9NE4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R4MYEN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TIE7EY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V8N34E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea
AT4G19640 Arabidopsis thaliana
AT5G45130 Arabidopsis thaliana
ATR0618G213 Amborella trichopoda
ATR0763G017 Amborella trichopoda
ATR0807G013 Amborella trichopoda
ATR0980G003 Amborella trichopoda
Atru.chr1.2081 Acer truncatum
Atru.chr1.3278 Acer truncatum
Atru.chr10.584 Acer truncatum
Atru.chr7.1343 Acer truncatum
AUR62004756 Chenopodium quinoa
AUR62011001 Chenopodium quinoa
AUR62021513 Chenopodium quinoa
AUR62037499 Chenopodium quinoa
BcaB07g30475 Brassica carinata
BcaB07g30908 Brassica carinata
BcaC04g21793 Brassica carinata
BcaC06g31572 Brassica carinata
BcaC06g34488 Brassica carinata
BcaC09g51396 Brassica carinata
BcaNung01766 Brassica carinata
BcaNung06115 Brassica carinata
BcaNung06116 Brassica carinata
BolC1t01332H Brassica oleracea
BolC3t20503H Brassica oleracea
BolC7t43325H Brassica oleracea
BolC9t55622H Brassica oleracea
BraA01t01096Z Brassica rapa
BraA01t01100Z Brassica rapa
BraA06t27548Z Brassica rapa
BraA09t37760Z Brassica rapa
C01p13580 Brassica napus
C03p82510 Brassica napus
C07p27920 Brassica napus
C09p27530 Brassica napus
CAN.G304.7 Capsicum annuum
CAN.G675.5 Capsicum annuum
CAN.G809.99 Capsicum annuum
CAN.G953.4 Capsicum annuum
CANSAT35G0080 Cannabis sativa
CANSAT56G1959 Cannabis sativa
CANSAT56G4143 Cannabis sativa
CANSAT64G0840 Cannabis sativa
CANSAT78G1792 Cannabis sativa
CARHR177440 Cardamine hirsuta
CARHR226440 Cardamine hirsuta
Carub.0007s2153 Capsella rubella
Carub.0008s0306 Capsella rubella
Ca_01118_v3 Cicer arietinum L.
Ca_05753_v3 Cicer arietinum L.
Ca_17064_v3 Cicer arietinum L.
Ca_17340_v3 Cicer arietinum L.
Ca_29736_v3 Cicer arietinum L.
CBR_g46684 Chara braunii
Cc04_g03390 Coffea canephora
Cc06_g09590 Coffea canephora
Cc07_g12700 Coffea canephora
Cc09_g06710 Coffea canephora
Cc09_g06720 Coffea canephora
Cc11_g03210 Coffea canephora
CDE04G2699 Ceratophyllum demersum
CDE04G2758 Ceratophyllum demersum
CDE07G1681 Ceratophyllum demersum
CDE07G1969 Ceratophyllum demersum
CDE08G1642 Ceratophyllum demersum
Cfa000739 Carpinus fangiana
Cfa002073 Carpinus fangiana
Cfa003262 Carpinus fangiana
Cfa007743 Carpinus fangiana
Ciclev10009547m.g Citrus clementina
Ciclev10016769m.g Citrus clementina
Ciclev10027073m.g Citrus clementina
CiPaw.01G238800 Carya illinoinensis
CiPaw.02G150900 Carya illinoinensis
CiPaw.03G078300 Carya illinoinensis
CiPaw.03G232700 Carya illinoinensis
CiPaw.04G050000 Carya illinoinensis
CiPaw.04G164700 Carya illinoinensis
CiPaw.09G151700 Carya illinoinensis
CiPaw.10G112900 Carya illinoinensis
ClCG01G009100 Citrullus lanatus
COL.COLO4_30386 Corchorus olitorius
COL.COLO4_30942 Corchorus olitorius
COL.COLO4_34913 Corchorus olitorius
Cpa.g.sc135.46 Carica papaya
Cpa.g.sc810.6 Carica papaya
Cpa.g.sc904.6 Carica papaya
Cre12.g517400 Chlamydomonas reinhardtii
CsaV3_1G046470 Cucumis sativus L.
CSS0000394 Camellia sinensis var. sinensis
CSS0002555 Camellia sinensis var. sinensis
CSS0009394 Camellia sinensis var. sinensis
CSS0011763 Camellia sinensis var. sinensis
CSS0025661 Camellia sinensis var. sinensis
CSS0036017 Camellia sinensis var. sinensis
CSS0042434 Camellia sinensis var. sinensis
DCAR_003798 Daucus carota
DCAR_004319 Daucus carota
DCAR_014139 Daucus carota
Dinv18596 Davidia involucrata
Dinv19086 Davidia involucrata
Dinv20469 Davidia involucrata
Dinv28252 Davidia involucrata
Dinv30505 Davidia involucrata
Dinv36621 Davidia involucrata
Dinv41595 Davidia involucrata
Duzib160G0471 Durio zibethinus
Duzib168G0841 Durio zibethinus
Duzib187G0290 Durio zibethinus
Duzib192G0683 Durio zibethinus
Duzib235G0959 Durio zibethinus
Duzib235G1443 Durio zibethinus
ECA234G4503 Erigeron canadensis
ECA238G1456 Erigeron canadensis
EL10Ac2g03090 Beta vulgaris
EL10Ac4g08910 Beta vulgaris
EL10Ac8g18504 Beta vulgaris
EL10Ac9g22004 Beta vulgaris
Eucgr.C01048 Eucalyptus grandis
Eucgr.E01926 Eucalyptus grandis
Eucgr.F03019 Eucalyptus grandis
Eucgr.J01646 Eucalyptus grandis
Eucgr.J02989 Eucalyptus grandis
Eucgr.L02409 Eucalyptus grandis
FAN02G3280 Fragaria x ananassa
FAN05G3209 Fragaria x ananassa
FAN09G2157 Fragaria x ananassa
FAN14G0368 Fragaria x ananassa
FAN16G0932 Fragaria x ananassa
FAN19G2620 Fragaria x ananassa
FAN21G0879 Fragaria x ananassa
FAN23G2182 Fragaria x ananassa
FAN25G1079 Fragaria x ananassa
FAN26G2337 Fragaria x ananassa
FAN28G0077 Fragaria x ananassa
FvH4_1g04940 Fragaria vesca
FvH4_3g11910 Fragaria vesca
FvH4_6g31240 Fragaria vesca
Glyma.05G231400 Glycine max
Glyma.08G038902 Glycine max
Glyma.11G209354 Glycine max
Glyma.13G359100 Glycine max
Glyma.15G014700 Glycine max
Glyma.18G045000 Glycine max
Gohir.1Z049386 Gossypium hirsutum
Gohir.A02G121300 Gossypium hirsutum
Gohir.A05G022700 Gossypium hirsutum
Gohir.A05G143900 Gossypium hirsutum
Gohir.A06G062000 Gossypium hirsutum
Gohir.A06G140500 Gossypium hirsutum
Gohir.A06G195400 Gossypium hirsutum
Gohir.A07G006500 Gossypium hirsutum
Gohir.A09G076600 Gossypium hirsutum
Gohir.D03G063700 Gossypium hirsutum
Gohir.D05G024200 Gossypium hirsutum
Gohir.D05G146200 Gossypium hirsutum
Gohir.D06G060300 Gossypium hirsutum
Gohir.D06G147200 Gossypium hirsutum
Gohir.D06G203000 Gossypium hirsutum
Gohir.D07G005500 Gossypium hirsutum
Gohir.D09G076500 Gossypium hirsutum
Gorai.001G005000 Gossypium raimondii
Gorai.002G059500 Gossypium raimondii
Gorai.006G091700 Gossypium raimondii
Gorai.009G024300 Gossypium raimondii
Gorai.009G150100 Gossypium raimondii
Gorai.010G070200 Gossypium raimondii
Gorai.010G171600 Gossypium raimondii
Gorai.010G236900 Gossypium raimondii
GSVIVG01015398001 Vitis vinifera
GSVIVG01017102001 Vitis vinifera
GSVIVG01035267001 Vitis vinifera
HanXRQChr12g0355491 Helianthus annuus
HanXRQChr12g0365651 Helianthus annuus
HanXRQChr14g0443351 Helianthus annuus
Haze_06003 Corylus avellana
Haze_14333 Corylus avellana
Haze_16411 Corylus avellana
Haze_25709 Corylus avellana
Hma1.2p1_0092F.1_g046670 Hydrangea macrophylla
Hma1.2p1_0365F.1_g136730 Hydrangea macrophylla
Hma1.2p1_0533F.1_g173510 Hydrangea macrophylla
Hma1.2p1_2039F.1_g312130 Hydrangea macrophylla
Hma1.2p1_2537F.1_g324100 Hydrangea macrophylla
HPP92_007300 Vanilla planifolia
HPP92_018657 Vanilla planifolia
Hund06862 Selenicereus undatus
Lalb_Chr10g0104011 Lupinus albus
Lalb_Chr15g0085321 Lupinus albus
Lalb_Chr17g0345851 Lupinus albus
Lalb_Chr18g0053771 Lupinus albus
Lj1A1142T61 Lonicera japonica
Lj2A354T54 Lonicera japonica
Lj3g0025391 Lotus japonicus
Lj4C250G11 Lonicera japonica
Lj4g0017239 Lotus japonicus
Lj5A60T67 Lonicera japonica
Lj6g0017339 Lotus japonicus
Lj7C649T3 Lonicera japonica
LjContig00141g0027574 Lotus japonicus
Lsat_1_v5_gn_2_71900 Lactuca sativa
Lsat_1_v5_gn_4_136941 Lactuca sativa
Manes.03G019800 Manihot esculenta
Manes.03G077100 Manihot esculenta
Manes.04G124000 Manihot esculenta
Manes.16G053863 Manihot esculenta
Mapoly0036s0134 Marchantia polymorpha
MBI06_g46881_MAGBIO Magnolia biondii
MBI06_g47949_MAGBIO Magnolia biondii
MBI08_g22599_MAGBIO Magnolia biondii
MBI18_g29060_MAGBIO Magnolia biondii
MCO07G548 Micromonas commoda
MD02G1048000 Malus domestica
MD05G1256700 Malus domestica
MD09G1212500 Malus domestica
MD10G1237200 Malus domestica
MD15G1186400 Malus domestica
MD15G1186500 Malus domestica
MD17G1194500 Malus domestica
Medtr2g102060 Medicago truncatula
Medtr3g064390 Medicago truncatula
Medtr5g076590 Medicago truncatula
Medtr8g103550 Medicago truncatula
MELO3C021803.2 Cucumis melo
Migut.K00980 Erythranthe guttata
Migut.M01959 Erythranthe guttata
MSTRG.15628 Avicennia marina
MSTRG.16327 Avicennia marina
MSTRG.3667 Avicennia marina
MSTRG.7580 Avicennia marina
Nitab4.5_0000017g0100 Nicotiana tabacum
Nitab4.5_0000483g0150 Nicotiana tabacum
Nitab4.5_0002297g0100 Nicotiana tabacum
Nitab4.5_0003412g0050 Nicotiana tabacum
Nitab4.5_0005797g0030 Nicotiana tabacum
Nitab4.5_0010661g0010 Nicotiana tabacum
Nitab4.5_0014392g0010 Nicotiana tabacum
Nitab4.5_0022386g0010 Nicotiana tabacum
Nn1g02207 Nelumbo nucifera
Nn2g11760 Nelumbo nucifera
Nn4g24806 Nelumbo nucifera
Nn8g39207 Nelumbo nucifera
Oeu000476.1 Olea europaea
Oeu012516.1 Olea europaea
Oeu023881.1 Olea europaea
Oeu060338.1 Olea europaea
Oeu063114.1 Olea europaea
Os03g0666500 Oryza sativa ssp. japonica
Os06g0687100 Oryza sativa ssp. japonica
Os12g0631100 Oryza sativa ssp. japonica
Peaxi162Scf00195g00010 Petunia axillaris
Peaxi162Scf00344g02016 Petunia axillaris
Peaxi162Scf00560g00124 Petunia axillaris
Peaxi162Scf00956g00315 Petunia axillaris
PGR042G2271 Punica granatum
PGR042G3497 Punica granatum
PGR102G1020 Punica granatum
PGR142G0201 Punica granatum
PGSC0003DMG400019719 Solanum tuberosum
PGSC0003DMG400021456 Solanum tuberosum
Phvul.002G313600 Phaseolus vulgaris
Phvul.005G170900 Phaseolus vulgaris
Phvul.006G086000 Phaseolus vulgaris
Potri.003G054900 Populus trichocarpa
Potri.012G117800 Populus trichocarpa
Potri.015G113000 Populus trichocarpa
Potri.018G079300 Populus trichocarpa
Pp3c5_220 Physcomitrium patens
Pp3c6_28860 Physcomitrium patens
PRCOL_00004525 Prasinoderma coloniale
Prupe.3G070500 Prunus persica
Prupe.4G107100 Prunus persica
Prupe.7G230200 Prunus persica
Psat2g042520 Pisum sativum
Psat5g143360 Pisum sativum
Psat5g298800 Pisum sativum
Psat7g014200 Pisum sativum
PSO063G6451 Papaver somniferum
PSO063G6513 Papaver somniferum
PSO782G3169 Papaver somniferum
QL02p064039 Quercus lobata
QL02p085492 Quercus lobata
QL05p023420 Quercus lobata
QL05p062976 Quercus lobata
QL10p054892 Quercus lobata
RcHm_v2.0_Chr2g0090541 Rosa chinensis
RcHm_v2.0_Chr2g0137961 Rosa chinensis
RcHm_v2.0_Chr5g0019441 Rosa chinensis
Rhsim03G0243000 Rhododendron simsii
Rhsim08G0022300 Rhododendron simsii
Rhsim08G0221800 Rhododendron simsii
Rhsim10G0185900 Rhododendron simsii
Rhsim13G0128200 Rhododendron simsii
RhsimUnG0085300 Rhododendron simsii
Sabra03G0031000 Salix brachista
Sabra12G0087300 Salix brachista
Sabra12G0091000 Salix brachista
Sabra15G0134600 Salix brachista
Sabra18G0067000 Salix brachista
Sabra18G0067100 Salix brachista
SalBow7G0112 Salvia bowleyana
SalBow8G1435 Salvia bowleyana
Sc08g0007450 Simmondsia chinensis
Sc09g0004580 Simmondsia chinensis
Sc20g0000950 Simmondsia chinensis
Sed0026663 Sechium edule
Sed0028222 Sechium edule
SEGI_04962 Sequoiadendron giganteum
SEGI_13783 Sequoiadendron giganteum
SEGI_14883 Sequoiadendron giganteum
SGA_v2.0_scaffold223G42909 Striga asiatica
SGA_v2.0_scaffold298G47657 Striga asiatica
SGA_v2.0_scaffold45G17103 Striga asiatica
SHI02748 Sapria himalayana
SHI02750 Sapria himalayana
SHI31583 Sapria himalayana
Solyc02g036450.3 Solanum lycopersicum
Solyc02g069370.3 Solanum lycopersicum
Solyc02g081380.3 Solanum lycopersicum
Sopen02g011810 Solanum pennellii
Sopen02g018520 Solanum pennellii
Sopen02g026010 Solanum pennellii
Sp2g09950 Schrenkiella parvula
Sp7g18190 Schrenkiella parvula
TAR374G0455 Trochodendron aralioides
TAR622G0914 Trochodendron aralioides
TAR624G1165 Trochodendron aralioides
TAR636G1098 Trochodendron aralioides
THA.LOC104798547 Tarenaya hassleriana
THA.LOC104799072 Tarenaya hassleriana
THA.LOC104811408 Tarenaya hassleriana
THA.LOC104812901 Tarenaya hassleriana
Thecc.06G089100 Theobroma cacao
Thecc.06G136800 Theobroma cacao
Thecc.09G111400 Theobroma cacao
Thhalv10001031m.g Eutrema salsugineum
Thhalv10026281m.g Eutrema salsugineum
TPR.G21676 Trifolium pratense
TPR.G28764 Trifolium pratense
TPR.G37213 Trifolium pratense
TPR.G5318 Trifolium pratense
TWI09G0548 Tripterygium wilfordii
TWI12G1305 Tripterygium wilfordii
TWI32G1343 Tripterygium wilfordii
TWI34G1257 Tripterygium wilfordii
TWI53G0248 Tripterygium wilfordii
TWI53G1966 Tripterygium wilfordii
TWI73G0924 Tripterygium wilfordii
unitig_0.g2637 Utricularia gibba
unitig_32.g10732 Utricularia gibba
vmacro03494 Vaccinium macrocarpon
vmacro03495 Vaccinium macrocarpon
vmacro06214 Vaccinium macrocarpon
vmacro18503 Vaccinium macrocarpon
vmacro18905 Vaccinium macrocarpon
vmacro20458 Vaccinium macrocarpon
vmacro20694 Vaccinium macrocarpon
VMungo0251G0127 Vigna mungo
VMungo0540G0110 Vigna mungo
VMungo1080G1306 Vigna mungo
Zm00001eb032760 Zea mays
Zm00001eb065460 Zea mays
Zm00001eb217750 Zea mays
Zm00001eb390670 Zea mays

User provided reference genes

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