Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p14360 Brassica napus
A03p00170 Brassica napus
A03p03090 Brassica napus
A03p21210 Brassica napus
A04p30750 Brassica napus
A05p06090 Brassica napus
A05p07680 Brassica napus
A06p02850 Brassica napus
A07p22750 Brassica napus
A09p49090 Brassica napus
A10p30820 Brassica napus
Aa31LG10G11020 Aethionema arabicum
Aa31LG11G6480 Aethionema arabicum
Aa31LG1G23260 Aethionema arabicum
Aa31LG5G19200 Aethionema arabicum
Aa31LG8G14050 Aethionema arabicum
Aa31sc136G80 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2159 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5270 Anthoceros agrestis
Actinidia00655 Actinidia chinensis
Actinidia11551 Actinidia chinensis
Actinidia20768 Actinidia chinensis
Actinidia29069 Actinidia chinensis
Actinidia32543 Actinidia chinensis
Actinidia32608 Actinidia chinensis
Ah.02g115490 Amaranthus hybridus
Ah.08g215090 Amaranthus hybridus
Ah.10g036110 Amaranthus hybridus
Ah.12g059070 Amaranthus hybridus
AL4G35580 Arabidopsis lyrata
AL4G38200 Arabidopsis lyrata
AL5G37430 Arabidopsis lyrata
AL6G10410 Arabidopsis lyrata
AL6G15280 Arabidopsis lyrata
AL6G17290 Arabidopsis lyrata
Aqoxy1G01283 Aquilegia oxysepala
Aqoxy1G02932 Aquilegia oxysepala
Aqoxy3G02128 Aquilegia oxysepala
AT2G38360 Arabidopsis thaliana
AT2G40380 Arabidopsis thaliana
AT3G56110 Arabidopsis thaliana
AT4G00005 Arabidopsis thaliana
AT5G01640 Arabidopsis thaliana
AT5G05380 Arabidopsis thaliana
AT5G07110 Arabidopsis thaliana
ATR0594G189 Amborella trichopoda
ATR0752G169 Amborella trichopoda
Atru.chr8.2334 Acer truncatum
AUR62001868 Chenopodium quinoa
AUR62009666 Chenopodium quinoa
BcaB01g00030 Brassica carinata
BcaB01g03694 Brassica carinata
BcaB01g03700 Brassica carinata
BcaB01g06034 Brassica carinata
BcaB01g06110 Brassica carinata
BcaB01g06243 Brassica carinata
BcaB02g07668 Brassica carinata
BcaB02g09026 Brassica carinata
BcaB03g15048 Brassica carinata
BcaB03g15567 Brassica carinata
BcaB03g15582 Brassica carinata
BcaB03g16596 Brassica carinata
BcaB03g16597 Brassica carinata
BcaC01g05546 Brassica carinata
BcaC02g12152 Brassica carinata
BcaC03g17675 Brassica carinata
BcaC04g19332 Brassica carinata
BcaC06g32251 Brassica carinata
BcaC06g32252 Brassica carinata
BcaC07g39926 Brassica carinata
BcaC08g44761 Brassica carinata
BolC1t03233H Brassica oleracea
BolC3t12596H Brassica oleracea
BolC3t12890H Brassica oleracea
BolC3t14901H Brassica oleracea
BolC4t22323H Brassica oleracea
BolC4t22528H Brassica oleracea
BolC4t28322H Brassica oleracea
BolC6t37502H Brassica oleracea
BolC8t50762H Brassica oleracea
BolC9t59894H Brassica oleracea
BraA01t01381Z Brassica rapa
BraA03t09407Z Brassica rapa
BraA03t09666Z Brassica rapa
BraA03t11358Z Brassica rapa
BraA03t13487Z Brassica rapa
BraA04t18534Z Brassica rapa
BraA05t19572Z Brassica rapa
BraA05t19735Z Brassica rapa
BraA06t23492Z Brassica rapa
BraA07t28912Z Brassica rapa
BraA07t29944Z Brassica rapa
BraA09t40361Z Brassica rapa
BraA10t45124Z Brassica rapa
C02p56810 Brassica napus
C03p00320 Brassica napus
C03p03480 Brassica napus
C03p25100 Brassica napus
C04p07020 Brassica napus
C04p09210 Brassica napus
C04p68160 Brassica napus
C06p23290 Brassica napus
C08p31410 Brassica napus
C09p67300 Brassica napus
C09p71320 Brassica napus
CAN.G1218.10 Capsicum annuum
CAN.G1225.3 Capsicum annuum
CAN.G967.5 Capsicum annuum
CANSAT35G1261 Cannabis sativa
CANSAT54G2218 Cannabis sativa
CANSAT56G2412 Cannabis sativa
CARHR132970 Cardamine hirsuta
CARHR135460 Cardamine hirsuta
CARHR166260 Cardamine hirsuta
CARHR206040 Cardamine hirsuta
CARHR207850 Cardamine hirsuta
CARHR212000 Cardamine hirsuta
Carub.0004s2033 Capsella rubella
Carub.0004s2262 Capsella rubella
Carub.0005s2286 Capsella rubella
Carub.0006s0019 Capsella rubella
Carub.0006s0431 Capsella rubella
Carub.0006s0603 Capsella rubella
Ca_06004_v3 Cicer arietinum L.
Ca_13501_v3 Cicer arietinum L.
CBR_g8580 Chara braunii
Cc01_g14870 Coffea canephora
Cc02_g05920 Coffea canephora
Cc06_g00760 Coffea canephora
CDE04G0226 Ceratophyllum demersum
CDE06G0960 Ceratophyllum demersum
CDE06G1639 Ceratophyllum demersum
Cfa001260 Carpinus fangiana
Cfa011780 Carpinus fangiana
Cfa017115 Carpinus fangiana
Ciclev10007001m.g Citrus clementina
Ciclev10012679m.g Citrus clementina
Ciclev10032726m.g Citrus clementina
CiPaw.01G302300 Carya illinoinensis
CiPaw.02G196400 Carya illinoinensis
CiPaw.09G215200 Carya illinoinensis
CiPaw.10G160500 Carya illinoinensis
ClCG04G006680 Citrullus lanatus
ClCG07G004680 Citrullus lanatus
COL.COLO4_11156 Corchorus olitorius
COL.COLO4_25801 Corchorus olitorius
Cpa.g.sc19.117 Carica papaya
Cpa.g.sc2.353 Carica papaya
Cpa.g.sc5.237 Carica papaya
Cre01.g012500 Chlamydomonas reinhardtii
CsaV3_3G033410 Cucumis sativus L.
CsaV3_4G026750 Cucumis sativus L.
CsaV3_5G010620 Cucumis sativus L.
CSS0005280 Camellia sinensis var. sinensis
CSS0006366 Camellia sinensis var. sinensis
CSS0039440 Camellia sinensis var. sinensis
CSS0041046 Camellia sinensis var. sinensis
CSS0043515 Camellia sinensis var. sinensis
DCAR_011860 Daucus carota
DCAR_012269 Daucus carota
DCAR_018668 Daucus carota
DCAR_023996 Daucus carota
DCAR_028885 Daucus carota
Dinv21795 Davidia involucrata
Dinv35408 Davidia involucrata
Duzib093G0116 Durio zibethinus
Duzib106G1936 Durio zibethinus
Duzib114G0277 Durio zibethinus
Duzib128G0628 Durio zibethinus
Duzib128G0992 Durio zibethinus
Duzib170G0149 Durio zibethinus
ECA233G3958 Erigeron canadensis
ECA236G3772 Erigeron canadensis
ECA238G4136 Erigeron canadensis
ECA248G1527 Erigeron canadensis
ECA248G2981 Erigeron canadensis
EL10Ac2g04908 Beta vulgaris
EL10Ac7g15923 Beta vulgaris
FAN01G0558 Fragaria x ananassa
FAN02G1377 Fragaria x ananassa
FAN03G2324 Fragaria x ananassa
FAN05G0001 Fragaria x ananassa
FAN05G2540 Fragaria x ananassa
FAN06G0992 Fragaria x ananassa
FAN08G0590 Fragaria x ananassa
FAN09G3703 Fragaria x ananassa
FAN11G1582 Fragaria x ananassa
FAN14G3400 Fragaria x ananassa
FAN16G2100 Fragaria x ananassa
FAN21G3166 Fragaria x ananassa
FAN25G2661 Fragaria x ananassa
FvH4_3g04281 Fragaria vesca
FvH4_3g39780 Fragaria vesca
FvH4_6g10630 Fragaria vesca
FvH4_7g25360 Fragaria vesca
Glyma.01G125900 Glycine max
Glyma.02G261100 Glycine max
Glyma.07G156400 Glycine max
Glyma.14G055500 Glycine max
Glyma.18G207100 Glycine max
Glyma.U031905 Glycine max
Gohir.A01G229900 Gossypium hirsutum
Gohir.A06G160200 Gossypium hirsutum
Gohir.A08G203300 Gossypium hirsutum
Gohir.A09G167900 Gossypium hirsutum
Gohir.A10G237700 Gossypium hirsutum
Gohir.A11G028360 Gossypium hirsutum
Gohir.D01G219800 Gossypium hirsutum
Gohir.D06G166300 Gossypium hirsutum
Gohir.D08G220400 Gossypium hirsutum
Gohir.D09G163800 Gossypium hirsutum
Gohir.D10G249500 Gossypium hirsutum
Gohir.D11G031600 Gossypium hirsutum
Gorai.002G266500 Gossypium raimondii
Gorai.004G234300 Gossypium raimondii
Gorai.006G185300 Gossypium raimondii
Gorai.007G034500 Gossypium raimondii
Gorai.010G193900 Gossypium raimondii
Gorai.011G289800 Gossypium raimondii
HanXRQChr01g0012191 Helianthus annuus
HanXRQChr05g0152091 Helianthus annuus
HanXRQChr08g0228651 Helianthus annuus
HanXRQChr09g0252741 Helianthus annuus
Haze_17292 Corylus avellana
Haze_21086 Corylus avellana
Haze_24413 Corylus avellana
Hma1.2p1_0292F.1_g115610 Hydrangea macrophylla
Hma1.2p1_0479F.1_g161655 Hydrangea macrophylla
Hma1.2p1_0479F.1_g161660 Hydrangea macrophylla
Hma1.2p1_0501F.1_g167380 Hydrangea macrophylla
Hma1.2p1_1586F.1_g292180 Hydrangea macrophylla
HPP92_003691 Vanilla planifolia
HPP92_019074 Vanilla planifolia
HPP92_019708 Vanilla planifolia
Lalb_Chr04g0250371 Lupinus albus
Lalb_Chr07g0191021 Lupinus albus
Lalb_Chr10g0105331 Lupinus albus
Lalb_Chr12g0207281 Lupinus albus
Lalb_Chr17g0346941 Lupinus albus
Lj1P962T74 Lonicera japonica
Lj2C331T7 Lonicera japonica
Lj2C67T3 Lonicera japonica
Lj2P1093T63 Lonicera japonica
Lj3g0017587 Lotus japonicus
Lj3P946T25 Lonicera japonica
Lj6g0016491 Lotus japonicus
Lj7P527T30 Lonicera japonica
LjContig00357g0026504 Lotus japonicus
Lsat_1_v5_gn_5_149240 Lactuca sativa
Lsat_1_v5_gn_5_173741 Lactuca sativa
Lsat_1_v5_gn_8_103460 Lactuca sativa
Lsat_1_v5_gn_8_13281 Lactuca sativa
Lsat_1_v5_gn_9_36160 Lactuca sativa
Lsat_1_v5_gn_9_60660 Lactuca sativa
Manes.10G007500 Manihot esculenta
Manes.13G070100 Manihot esculenta
Mapoly0065s0006 Marchantia polymorpha
MBI11_g37084_MAGBIO Magnolia biondii
MCO02G372 Micromonas commoda
MCO15G456 Micromonas commoda
MD01G1159700 Malus domestica
MD03G1056700 Malus domestica
MD04G1166500 Malus domestica
MD07G1228200 Malus domestica
MD11G1058500 Malus domestica
Medtr0562s0010 Medicago truncatula
Medtr3g031070 Medicago truncatula
Medtr4g014060 Medicago truncatula
Medtr5g083490 Medicago truncatula
MELO3C009132.2 Cucumis melo
MELO3C020093.2 Cucumis melo
MELO3C026026.2 Cucumis melo
Migut.F00627 Erythranthe guttata
Migut.F01463 Erythranthe guttata
Migut.J00097 Erythranthe guttata
Migut.L02044 Erythranthe guttata
MSTRG.187 Avicennia marina
MSTRG.27298 Avicennia marina
Nitab4.5_0000230g0230 Nicotiana tabacum
Nitab4.5_0000355g0240 Nicotiana tabacum
Nitab4.5_0001106g0130 Nicotiana tabacum
Nitab4.5_0002854g0010 Nicotiana tabacum
Nitab4.5_0011886g0010 Nicotiana tabacum
Nitab4.5_0012887g0020 Nicotiana tabacum
Nn2g11016 Nelumbo nucifera
Nn2g13264 Nelumbo nucifera
Nn3g18590 Nelumbo nucifera
Oeu019273.1 Olea europaea
Oeu038721.1 Olea europaea
Oeu043159.1 Olea europaea
Oeu051646.1 Olea europaea
Oeu059720.1 Olea europaea
Oeu063375.1 Olea europaea
Os01g0827400 Oryza sativa ssp. japonica
Os11g0107600 Oryza sativa ssp. japonica
Os12g0107600 Oryza sativa ssp. japonica
Peaxi162Scf00264g00089 Petunia axillaris
Peaxi162Scf00284g00214 Petunia axillaris
PGR004G0404 Punica granatum
PGR142G1748 Punica granatum
PGSC0003DMG400013196 Solanum tuberosum
PGSC0003DMG400015888 Solanum tuberosum
PGSC0003DMG400023954 Solanum tuberosum
Phvul.008G034800 Phaseolus vulgaris
Phvul.008G092600 Phaseolus vulgaris
Phvul.008G219900 Phaseolus vulgaris
Phvul.010G064200 Phaseolus vulgaris
Potri.006G104400 Populus trichocarpa
Potri.008G074000 Populus trichocarpa
Potri.008G074033 Populus trichocarpa
Potri.010G183300 Populus trichocarpa
Potri.016G126400 Populus trichocarpa
Potri.019G124100 Populus trichocarpa
Pp3c10_5130 Physcomitrium patens
Pp3c14_3580 Physcomitrium patens
Pp3c1_21000 Physcomitrium patens
Pp3c2_16380 Physcomitrium patens
PRCOL_00002154 Prasinoderma coloniale
PRCOL_00006886 Prasinoderma coloniale
Prupe.2G257700 Prunus persica
Prupe.6G048100 Prunus persica
Prupe.6G284700 Prunus persica
Psat2g029960 Pisum sativum
Psat7g035240 Pisum sativum
Psat7g249080 Pisum sativum
PSO339G4779 Papaver somniferum
PSO349G0018 Papaver somniferum
PSO384G2779 Papaver somniferum
PSO765G0075 Papaver somniferum
QL01p026207 Quercus lobata
QL07p033954 Quercus lobata
QL08p063974 Quercus lobata
QL93p0181_0023 Quercus lobata
RcHm_v2.0_Chr1g0318921 Rosa chinensis
RcHm_v2.0_Chr1g0371281 Rosa chinensis
RcHm_v2.0_Chr2g0165361 Rosa chinensis
RcHm_v2.0_Chr2g0174561 Rosa chinensis
RcHm_v2.0_Chr3g0461651 Rosa chinensis
RcHm_v2.0_Chr5g0045301 Rosa chinensis
RcHm_v2.0_Chr5g0071661 Rosa chinensis
Rhsim04G0124900 Rhododendron simsii
Rhsim05G0225600 Rhododendron simsii
Rhsim06G0098300 Rhododendron simsii
Rhsim09G0181400 Rhododendron simsii
Rhsim13G0063900 Rhododendron simsii
Sabra08G0055200 Salix brachista
Sabra16G0120800 Salix brachista
Sabra19G0122500 Salix brachista
Sabra19G0131900 Salix brachista
SalBow3G2664 Salvia bowleyana
SalBow4G2947 Salvia bowleyana
SalBow5G2076 Salvia bowleyana
SalBow5G2082 Salvia bowleyana
Sc01g0006070 Simmondsia chinensis
Sc07g0006460 Simmondsia chinensis
Sc10g0002750 Simmondsia chinensis
Sc21g0005290 Simmondsia chinensis
Sed0001484 Sechium edule
Sed0005707 Sechium edule
Sed0007399 Sechium edule
Sed0007465 Sechium edule
Sed0026393 Sechium edule
SEGI_09612 Sequoiadendron giganteum
SEGI_16503 Sequoiadendron giganteum
SEGI_22119 Sequoiadendron giganteum
SGA_v2.0_scaffold110G31187 Striga asiatica
SGA_v2.0_scaffold240G44070 Striga asiatica
SGA_v2.0_scaffold60G20954 Striga asiatica
SGA_v2.0_scaffold97G29256 Striga asiatica
SMO266G0049 Selaginella moellendorffii
Solyc06g050570.3 Solanum lycopersicum
Solyc10g076360.1 Solanum lycopersicum
Sopen06g016090 Solanum pennellii
Sopen09g008440 Solanum pennellii
Sopen10g028010 Solanum pennellii
Sp4g20680 Schrenkiella parvula
Sp4g22700 Schrenkiella parvula
Sp5g06420 Schrenkiella parvula
Sp6g37440 Schrenkiella parvula
Sp6g40900 Schrenkiella parvula
TAR369G0526 Trochodendron aralioides
TAR371G0009 Trochodendron aralioides
TAR623G1217 Trochodendron aralioides
TAR633G0509 Trochodendron aralioides
TAR636G3308 Trochodendron aralioides
THA.LOC104806053 Tarenaya hassleriana
THA.LOC104810128 Tarenaya hassleriana
THA.LOC104816527 Tarenaya hassleriana
THA.LOC104823366 Tarenaya hassleriana
Thecc.05G006900 Theobroma cacao
Thecc.09G358000 Theobroma cacao
Thecc.10G009100 Theobroma cacao
Thhalv10014647m.g Eutrema salsugineum
Thhalv10014660m.g Eutrema salsugineum
Thhalv10017219m.g Eutrema salsugineum
Thhalv10017233m.g Eutrema salsugineum
TPR.G30435 Trifolium pratense
TWI09G0996 Tripterygium wilfordii
TWI31G0171 Tripterygium wilfordii
TWI53G1378 Tripterygium wilfordii
TWI53G2130 Tripterygium wilfordii
TWI74G0673 Tripterygium wilfordii
unitig_0.g253 Utricularia gibba
unitig_88.g27660 Utricularia gibba
vmacro02915 Vaccinium macrocarpon
vmacro09994 Vaccinium macrocarpon
vmacro20325 Vaccinium macrocarpon
VMungo0331G0340 Vigna mungo
VMungo0647G0232 Vigna mungo
VMungo1383G0268 Vigna mungo
Zm00001eb056790 Zea mays
Zm00001eb149230 Zea mays
Zm00001eb195070 Zea mays
Zm00001eb290310 Zea mays
Zm00001eb351940 Zea mays

User provided reference genes

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