Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p24000 Brassica napus
Aa31LG2G2110 Aethionema arabicum
Aa31LG3G6170 Aethionema arabicum
Aa31LG3G6180 Aethionema arabicum
Actinidia24515 Actinidia chinensis
Ah.10g025760 Amaranthus hybridus
Ah.12g063400 Amaranthus hybridus
AL2G19270 Arabidopsis lyrata
Aqoxy3G01903 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.N044W1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TJCL76 Arachis hypogaea
AT1G64860 Arabidopsis thaliana
ATR0568G198 Amborella trichopoda
Atru.chr12.1813 Acer truncatum
AUR62024839 Chenopodium quinoa
AUR62032380 Chenopodium quinoa
BcaB05g23594 Brassica carinata
BcaC03g16031 Brassica carinata
BolC2t09801H Brassica oleracea
BraA02t07395Z Brassica rapa
C02p37850 Brassica napus
CAN.G65.124 Capsicum annuum
CAN.G732.31 Capsicum annuum
CANSAT21G0704 Cannabis sativa
CARHR056270 Cardamine hirsuta
Carub.0002s0979 Capsella rubella
Ca_00814_v3 Cicer arietinum L.
Ca_13824_v3 Cicer arietinum L.
Cc02_g00040 Coffea canephora
CDE01G0673 Ceratophyllum demersum
CDE02G0902 Ceratophyllum demersum
CDE02G4147 Ceratophyllum demersum
CDE11G0972 Ceratophyllum demersum
CDE12G0545 Ceratophyllum demersum
Cfa016111 Carpinus fangiana
Ciclev10031289m.g Citrus clementina
CiPaw.05G210700 Carya illinoinensis
CiPaw.06G037800 Carya illinoinensis
ClCG02G007910 Citrullus lanatus
COL.COLO4_08410 Corchorus olitorius
Cpa.g.sc3807.1 Carica papaya
Cpa.g.sc43.154 Carica papaya
CsaV3_2G035830 Cucumis sativus L.
CSS0006334 Camellia sinensis var. sinensis
CSS0017291 Camellia sinensis var. sinensis
CSS0029772 Camellia sinensis var. sinensis
CSS0041522 Camellia sinensis var. sinensis
DCAR_020435 Daucus carota
Dinv17236 Davidia involucrata
Dinv17237 Davidia involucrata
Duzib128G2026 Durio zibethinus
Duzib177G0786 Durio zibethinus
ECA232G1337 Erigeron canadensis
ECA233G0740 Erigeron canadensis
ECA238G3380 Erigeron canadensis
EL10Ac2g02539 Beta vulgaris
Eucgr.A02994 Eucalyptus grandis
FAN01G0343 Fragaria x ananassa
FAN03G2928 Fragaria x ananassa
FAN10G0750 Fragaria x ananassa
FvH4_7g34280 Fragaria vesca
Glyma.07G232251 Glycine max
Glyma.09G223600 Glycine max
Glyma.12G013300 Glycine max
Gohir.A08G221630 Gossypium hirsutum
Gohir.A11G221400 Gossypium hirsutum
Gohir.D08G239800 Gossypium hirsutum
Gohir.D11G234800 Gossypium hirsutum
Gorai.004G255000 Gossypium raimondii
Gorai.007G247500 Gossypium raimondii
GSVIVG01024261001 Vitis vinifera
HanXRQChr05g0144361 Helianthus annuus
HanXRQChr08g0223061 Helianthus annuus
HanXRQChr14g0461121 Helianthus annuus
HanXRQChr15g0485731 Helianthus annuus
Haze_00346 Corylus avellana
HPP92_022731 Vanilla planifolia
HPP92_022744 Vanilla planifolia
Lalb_Chr01g0000711 Lupinus albus
Lalb_Chr19g0140121 Lupinus albus
Lj3C883T3 Lonicera japonica
Lj3g0014992 Lotus japonicus
Lsat_1_v5_gn_2_127081 Lactuca sativa
Lsat_1_v5_gn_8_14040 Lactuca sativa
Lsat_1_v5_gn_9_50600 Lactuca sativa
Manes.08G159000 Manihot esculenta
Manes.09G130800 Manihot esculenta
MBI04_g30791_MAGBIO Magnolia biondii
MBI12_g00582_MAGBIO Magnolia biondii
MD01G1240100 Malus domestica
MD07G1311500 Malus domestica
Medtr0172s0030 Medicago truncatula
MELO3C024760.2 Cucumis melo
Migut.H00003 Erythranthe guttata
MSTRG.26919 Avicennia marina
MSTRG.8566 Avicennia marina
Nitab4.5_0000021g0930 Nicotiana tabacum
Nitab4.5_0000645g0090 Nicotiana tabacum
Nitab4.5_0002998g0010 Nicotiana tabacum
Nitab4.5_0005545g0050 Nicotiana tabacum
Nn1g09277 Nelumbo nucifera
Nn3g19169 Nelumbo nucifera
Oeu028991.1 Olea europaea
Os08g0163400 Oryza sativa ssp. japonica
Peaxi162Scf00516g00423 Petunia axillaris
Peaxi162Scf00815g00348 Petunia axillaris
Peaxi162Scf00815g00359 Petunia axillaris
PGSC0003DMG400026491 Solanum tuberosum
PGSC0003DMG400027038 Solanum tuberosum
Phvul.011G016400 Phaseolus vulgaris
Potri.013G075400 Populus trichocarpa
Potri.019G043300 Populus trichocarpa
Prupe.2G329700 Prunus persica
Psat7g161560 Pisum sativum
PSO063G5802 Papaver somniferum
PSO782G0173 Papaver somniferum
RcHm_v2.0_Chr1g0384631 Rosa chinensis
RcHm_v2.0_Chr2g0084691 Rosa chinensis
RcHm_v2.0_Chr4g0397231 Rosa chinensis
RcHm_v2.0_Chr5g0038511 Rosa chinensis
Rhsim03G0225500 Rhododendron simsii
Sabra13G0064900 Salix brachista
Sabra19G0054000 Salix brachista
SalBow1G3212 Salvia bowleyana
Sc13g0011030 Simmondsia chinensis
Sed0000344 Sechium edule
Sed0007466 Sechium edule
SEGI_09576 Sequoiadendron giganteum
SEGI_26324 Sequoiadendron giganteum
SEGI_32403 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08209 Striga asiatica
Solyc03g097320.3 Solanum lycopersicum
Solyc03g097330.1 Solanum lycopersicum
Solyc06g072710.3 Solanum lycopersicum
Sopen03g028090 Solanum pennellii
Sopen06g029080 Solanum pennellii
Sp5g19000 Schrenkiella parvula
TAR375G0320 Trochodendron aralioides
THA.LOC104821684 Tarenaya hassleriana
Thecc.05G227300 Theobroma cacao
Thhalv10002486m.g Eutrema salsugineum
TPR.G20254 Trifolium pratense
TWI32G0575 Tripterygium wilfordii
TWI60G0079 Tripterygium wilfordii
unitig_0.g2402 Utricularia gibba
unitig_52.g17686 Utricularia gibba
vmacro06358 Vaccinium macrocarpon
VMungo1127G0435 Vigna mungo
Zm00001eb172090 Zea mays
Zm00001eb415360 Zea mays

User provided reference genes

Program Settings