Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p41290 Brassica napus
A10p17860 Brassica napus
Aa31LG5G17400 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis
Actinidia40299 Actinidia chinensis
Ah.04g153720 Amaranthus hybridus
AL3G17930 Arabidopsis lyrata
Aqoxy5G00789 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea
AT3G06810 Arabidopsis thaliana
ATR0693G241 Amborella trichopoda
Atru.chr4.2905 Acer truncatum
AUR62015247 Chenopodium quinoa
AUR62018045 Chenopodium quinoa
BcaC05g30559 Brassica carinata
BcaC09g47921 Brassica carinata
BcaNung06666 Brassica carinata
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus
BolC1t05585H Brassica oleracea
BolC5t34705H Brassica oleracea
BraA05t22852Z Brassica rapa
C05p60510 Brassica napus
CAN.G449.73 Capsicum annuum
CANSAT78G0178 Cannabis sativa
CARHR081430 Cardamine hirsuta
Carub.0003s0635 Capsella rubella
Ca_01910_v3 Cicer arietinum L.
CBR_g54445 Chara braunii
Cc03_g01500 Coffea canephora
CDE11G0521 Ceratophyllum demersum
Cfa015427 Carpinus fangiana
Cfa022681 Carpinus fangiana
Cfa022758 Carpinus fangiana
Cfa024444 Carpinus fangiana
Ciclev10004291m.g Citrus clementina
Ciclev10004342m.g Citrus clementina
CiPaw.01G145300 Carya illinoinensis
ClCG05G006260 Citrullus lanatus
COL.COLO4_13820 Corchorus olitorius
Cpa.g.sc50.161 Carica papaya
Cre16.g675850 Chlamydomonas reinhardtii
CsaV3_3G014880 Cucumis sativus L.
CSS0035117 Camellia sinensis var. sinensis
DCAR_000477 Daucus carota
DCAR_023301 Daucus carota
DCAR_027053 Daucus carota
Dinv44350 Davidia involucrata
Duzib212G0051 Durio zibethinus
ECA246G3101 Erigeron canadensis
EL10Ac3g06663 Beta vulgaris
Eucgr.B01578 Eucalyptus grandis
FAN12G0537 Fragaria x ananassa
FAN12G1313 Fragaria x ananassa
FAN17G0377 Fragaria x ananassa
FvH4_4g18700 Fragaria vesca
Glyma.09G042000 Glycine max
Glyma.15G150900 Glycine max
Gohir.A02G051000 Gossypium hirsutum
Gohir.D02G055900 Gossypium hirsutum
Gorai.005G061800 Gossypium raimondii
GSVIVG01035107001 Vitis vinifera
HanXRQChr01g0024801 Helianthus annuus
HanXRQChr17g0535991 Helianthus annuus
Haze_01165 Corylus avellana
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla
HPP92_003120 Vanilla planifolia
Hund20507 Selenicereus undatus
Lalb_Chr15g0086081 Lupinus albus
Lalb_Chr20g0117401 Lupinus albus
Lj6A681T39 Lonicera japonica
Lj6g0019427 Lotus japonicus
Lsat_1_v5_gn_3_21560 Lactuca sativa
Lsat_1_v5_gn_3_21640 Lactuca sativa
Lsat_1_v5_gn_4_34540 Lactuca sativa
Lsat_1_v5_gn_5_23780 Lactuca sativa
Manes.03G198800 Manihot esculenta
Mapoly0111s0015 Marchantia polymorpha
MBI18_g23297_MAGBIO Magnolia biondii
MBI18_g37159_MAGBIO Magnolia biondii
MBI18_g44774_MAGBIO Magnolia biondii
MBI18_g46557_MAGBIO Magnolia biondii
MCO01G041 Micromonas commoda
MCO01G771 Micromonas commoda
MD13G1164300 Malus domestica
MD16G1164100 Malus domestica
Medtr2g435800 Medicago truncatula
Medtr2g436030 Medicago truncatula
MELO3C006684.2 Cucumis melo
Migut.N00074 Erythranthe guttata
Nitab4.5_0000695g0140 Nicotiana tabacum
Nitab4.5_0008670g0020 Nicotiana tabacum
Nn1g04010 Nelumbo nucifera
Nn3g21544 Nelumbo nucifera
Oeu016255.1 Olea europaea
Oeu031983.1 Olea europaea
Os07g0675000 Oryza sativa ssp. japonica
Peaxi162Scf00065g01213 Petunia axillaris
PGSC0003DMG400023436 Solanum tuberosum
PGSC0003DMG400027831 Solanum tuberosum
Phvul.009G250700 Phaseolus vulgaris
Potri.008G219000 Populus trichocarpa
Potri.010G010448 Populus trichocarpa
Pp3c18_21710 Physcomitrium patens
Pp3c22_4180 Physcomitrium patens
PRCOL_00002960 Prasinoderma coloniale
Prupe.1G131800 Prunus persica
Psat1g156400 Pisum sativum
PSO210G1050 Papaver somniferum
PSO832G2232 Papaver somniferum
QL06p007479 Quercus lobata
QL06p010392 Quercus lobata
QL93p0200_0027 Quercus lobata
RcHm_v2.0_Chr3g0480631 Rosa chinensis
RcHm_v2.0_Chr4g0423401 Rosa chinensis
RcHm_v2.0_Chr6g0311831 Rosa chinensis
Rhsim04G0225600 Rhododendron simsii
Rhsim04G0225700 Rhododendron simsii
Rhsim04G0226200 Rhododendron simsii
Rhsim04G0226400 Rhododendron simsii
Sabra10G0006600 Salix brachista
SalBow5G3485 Salvia bowleyana
Sc19g0005490 Simmondsia chinensis
Sed0001345 Sechium edule
SEGI_25692 Sequoiadendron giganteum
SEGI_30643 Sequoiadendron giganteum
SEGI_32872 Sequoiadendron giganteum
SGA_v2.0_scaffold119G32706 Striga asiatica
SHI00220 Sapria himalayana
SMO169G0300 Selaginella moellendorffii
SMO202G0033 Selaginella moellendorffii
Solyc01g066310.4 Solanum lycopersicum
Solyc05g054370.2 Solanum lycopersicum
Sopen01g027900 Solanum pennellii
Sopen05g032860 Solanum pennellii
Sp3g05780 Schrenkiella parvula
TAR365G0733 Trochodendron aralioides
THA.LOC104802695 Tarenaya hassleriana
Thecc.04G289100 Theobroma cacao
Thhalv10020074m.g Eutrema salsugineum
TPR.G13211 Trifolium pratense
TPR.G15436 Trifolium pratense
TPR.G26039 Trifolium pratense
TWI53G1493 Tripterygium wilfordii
TWI73G0801 Tripterygium wilfordii
unitig_26.g10563 Utricularia gibba
unitig_26.g10564 Utricularia gibba
vmacro08186 Vaccinium macrocarpon
VMungo1309G2596 Vigna mungo
Zm00001eb111400 Zea mays

User provided reference genes

Program Settings