Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p42940 Brassica napus
A03p03980 Brassica napus
Aa31LG10G11080 Aethionema arabicum
Aa31LG1G18160 Aethionema arabicum
Aa31LG3G17960 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis
Actinidia04370 Actinidia chinensis
Ah.11g040470 Amaranthus hybridus
AL6G19290 Arabidopsis lyrata
AL8G40820 Arabidopsis lyrata
Aqoxy3G01747 Aquilegia oxysepala
Aqoxy5G02794 Aquilegia oxysepala
AT5G08565 Arabidopsis thaliana
AT5G63670 Arabidopsis thaliana
ATR0693G307 Amborella trichopoda
ATR0772G012 Amborella trichopoda
Atru.chr11.27 Acer truncatum
Atru.chr11.31 Acer truncatum
Atru.chr6.1863 Acer truncatum
AUR62032890 Chenopodium quinoa
BcaB01g05582 Brassica carinata
BcaB01g05655 Brassica carinata
BcaB07g29700 Brassica carinata
BcaC03g18219 Brassica carinata
BolC2t12361H Brassica oleracea
BraA02t09217Z Brassica rapa
C02p62880 Brassica napus
C03p04450 Brassica napus
CAN.G419.18 Capsicum annuum
CANSAT78G1495 Cannabis sativa
CARHR204400 Cardamine hirsuta
CARHR278210 Cardamine hirsuta
Carub.0006s0753 Capsella rubella
Carub.0008s2444 Capsella rubella
Ca_16312_v3 Cicer arietinum L.
CBR_g44398 Chara braunii
Cc11_g00370 Coffea canephora
CDE07G1374 Ceratophyllum demersum
Cfa005243 Carpinus fangiana
Cfa023443 Carpinus fangiana
Ciclev10017231m.g Citrus clementina
CiPaw.05G123600 Carya illinoinensis
CiPaw.06G093300 Carya illinoinensis
ClCG05G012130 Citrullus lanatus
COL.COLO4_33156 Corchorus olitorius
Cpa.g.sc887.1 Carica papaya
Cre02.g116300 Chlamydomonas reinhardtii
CsaV3_3G020290 Cucumis sativus L.
CSS0028000 Camellia sinensis var. sinensis
DCAR_026806 Daucus carota
Dinv17660 Davidia involucrata
Duzib132G0727 Durio zibethinus
Duzib248G0155 Durio zibethinus
ECA246G1034 Erigeron canadensis
EL10Ac9g23021 Beta vulgaris
Eucgr.G02614 Eucalyptus grandis
FAN07G0418 Fragaria x ananassa
FAN12G0218 Fragaria x ananassa
FAN12G1626 Fragaria x ananassa
FAN17G0627 Fragaria x ananassa
FAN22G0072 Fragaria x ananassa
FvH4_4g10630 Fragaria vesca
Glyma.07G274100 Glycine max
Glyma.17G000400 Glycine max
Gohir.A04G109900 Gossypium hirsutum
Gohir.A13G062900 Gossypium hirsutum
Gohir.D04G150100 Gossypium hirsutum
Gohir.D13G059000 Gossypium hirsutum
Gorai.012G136700 Gossypium raimondii
Gorai.013G066800 Gossypium raimondii
GSVIVG01034346001 Vitis vinifera
HanXRQChr01g0026751 Helianthus annuus
HanXRQChr01g0026901 Helianthus annuus
HanXRQChr15g0475831 Helianthus annuus
Haze_11883 Corylus avellana
Haze_26483 Corylus avellana
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla
HPP92_027251 Vanilla planifolia
Hund08683 Selenicereus undatus
Lalb_Chr10g0094681 Lupinus albus
Lj5g0002326 Lotus japonicus
Lj5g0003678 Lotus japonicus
Lj5g0005298 Lotus japonicus
Lj6g0014483 Lotus japonicus
Lsat_1_v5_gn_1_108420 Lactuca sativa
Lsat_1_v5_gn_1_108541 Lactuca sativa
Manes.01G004880 Manihot esculenta
Mapoly0092s0011 Marchantia polymorpha
Mapoly0166s0006 Marchantia polymorpha
MBI11_g25051_MAGBIO Magnolia biondii
MCO11G500 Micromonas commoda
MD04G1047800 Malus domestica
MD07G1114100 Malus domestica
MD09G1278200 Malus domestica
MD17G1271200 Malus domestica
Medtr3g092730 Medicago truncatula
Medtr3g092770 Medicago truncatula
MELO3C023752.2 Cucumis melo
Migut.N02765 Erythranthe guttata
MSTRG.1036 Avicennia marina
MSTRG.25043 Avicennia marina
Nitab4.5_0000129g0010 Nicotiana tabacum
Nitab4.5_0000129g0060 Nicotiana tabacum
Nitab4.5_0008730g0050 Nicotiana tabacum
Nitab4.5_0011163g0030 Nicotiana tabacum
Nn8g39808 Nelumbo nucifera
Oeu002508.1 Olea europaea
Oeu039967.1 Olea europaea
Os07g0623400 Oryza sativa ssp. japonica
Peaxi162Scf00329g00317 Petunia axillaris
PGR142G2001 Punica granatum
PGSC0003DMG400025297 Solanum tuberosum
Phvul.001G068300 Phaseolus vulgaris
Phvul.003G004200 Phaseolus vulgaris
Potri.008G002400 Populus trichocarpa
Potri.010G255000 Populus trichocarpa
Pp3c5_27050 Physcomitrium patens
Pp3c6_2640 Physcomitrium patens
PRCOL_00005197 Prasinoderma coloniale
Prupe.3G015100 Prunus persica
Psat5g071960 Pisum sativum
PSO339G5842 Papaver somniferum
PSO541G0162 Papaver somniferum
PSO675G8561 Papaver somniferum
QL03p073673 Quercus lobata
RcHm_v2.0_Chr4g0406241 Rosa chinensis
Rhsim12G0090000 Rhododendron simsii
Sabra10G0198500 Salix brachista
SalBow6G4393 Salvia bowleyana
SalBow6G5789 Salvia bowleyana
SalBow8G4232 Salvia bowleyana
SalBow8G4318 Salvia bowleyana
Sc06g0007290 Simmondsia chinensis
Sc06g0007760 Simmondsia chinensis
Sc06g0007770 Simmondsia chinensis
Sed0002882 Sechium edule
Sed0027851 Sechium edule
SEGI_05202 Sequoiadendron giganteum
SEGI_39424 Sequoiadendron giganteum
SGA_v2.0_scaffold14G06942 Striga asiatica
SGA_v2.0_scaffold231G43443 Striga asiatica
SGA_v2.0_scaffold417G51254 Striga asiatica
SMO358G0649 Selaginella moellendorffii
Solyc04g008750.3 Solanum lycopersicum
Sopen04g003930 Solanum pennellii
Sp2g26760 Schrenkiella parvula
Sp6g34300 Schrenkiella parvula
TAR629G2421 Trochodendron aralioides
THA.LOC104800345 Tarenaya hassleriana
THA.LOC104819361 Tarenaya hassleriana
Thecc.02G151700 Theobroma cacao
Thhalv10005155m.g Eutrema salsugineum
Thhalv10015347m.g Eutrema salsugineum
TPR.G31176 Trifolium pratense
TWI15G0512 Tripterygium wilfordii
unitig_749.g13837 Utricularia gibba
vmacro00989 Vaccinium macrocarpon

User provided reference genes

Program Settings