Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p00120 Brassica napus
A08p20090 Brassica napus
Aa31LG2G22230 Aethionema arabicum
Aa31LG8G17560 Aethionema arabicum
Actinidia11016 Actinidia chinensis
Actinidia11091 Actinidia chinensis
AL3G53730 Arabidopsis lyrata
AL7G24220 Arabidopsis lyrata
Aqoxy1G02375 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea
AT2G20650 Arabidopsis thaliana
AT4G28370 Arabidopsis thaliana
ATR0763G074 Amborella trichopoda
Atru.chr6.2897 Acer truncatum
Atru.chr6.2898 Acer truncatum
AUR62033734 Chenopodium quinoa
AUR62033735 Chenopodium quinoa
AUR62038894 Chenopodium quinoa
AUR62038895 Chenopodium quinoa
AUR62038896 Chenopodium quinoa
BcaB03g12570 Brassica carinata
BcaB03g16858 Brassica carinata
BcaC06g36756 Brassica carinata
BcaC07g38328 Brassica carinata
BolC7t40478H Brassica oleracea
BolC8t48758H Brassica oleracea
BraA07t27805Z Brassica rapa
BraA08t33968Z Brassica rapa
C07p00280 Brassica napus
C08p10830 Brassica napus
CANSAT64G2319 Cannabis sativa
CARHR111300 Cardamine hirsuta
CARHR236110 Cardamine hirsuta
Carub.0003s3517 Capsella rubella
Carub.0007s1237 Capsella rubella
Ca_09445_v3 Cicer arietinum L.
Ca_18937_v3 Cicer arietinum L.
CBR_g36920 Chara braunii
Cc03_g12070 Coffea canephora
Cc05_g07440 Coffea canephora
CDE05G0163 Ceratophyllum demersum
CDE05G0895 Ceratophyllum demersum
CDE05G2312 Ceratophyllum demersum
Cfa014637 Carpinus fangiana
Cfa022079 Carpinus fangiana
Ciclev10013591m.g Citrus clementina
Ciclev10014745m.g Citrus clementina
CiPaw.03G179000 Carya illinoinensis
ClCG02G017760 Citrullus lanatus
COL.COLO4_05947 Corchorus olitorius
Cpa.g.sc83.63 Carica papaya
Cre08.g381900 Chlamydomonas reinhardtii
CsaV3_6G015220 Cucumis sativus L.
CSS0000262 Camellia sinensis var. sinensis
CSS0014582 Camellia sinensis var. sinensis
DCAR_009753 Daucus carota
Dinv04814 Davidia involucrata
Dinv13394 Davidia involucrata
ECA234G2175 Erigeron canadensis
EL10Ac9g20792 Beta vulgaris
Eucgr.K01043 Eucalyptus grandis
FAN02G3736 Fragaria x ananassa
FAN05G5576 Fragaria x ananassa
FAN09G2589 Fragaria x ananassa
FAN14G3021 Fragaria x ananassa
FvH4_6g26490 Fragaria vesca
Glyma.06G290800 Glycine max
Glyma.12G116100 Glycine max
Glyma.12G205300 Glycine max
Glyma.13G295600 Glycine max
Glyma.14G107350 Glycine max
Gohir.A03G155600 Gossypium hirsutum
Gohir.D02G178700 Gossypium hirsutum
Gorai.005G200400 Gossypium raimondii
GSVIVG01020571001 Vitis vinifera
HanXRQChr05g0143301 Helianthus annuus
Haze_13201 Corylus avellana
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla
HPP92_012418 Vanilla planifolia
Hund01030 Selenicereus undatus
Lalb_Chr01g0005151 Lupinus albus
Lalb_Chr03g0029541 Lupinus albus
Lalb_Chr19g0135191 Lupinus albus
Lj1A714G27 Lonicera japonica
Lj3g0011593 Lotus japonicus
Lj3g0017215 Lotus japonicus
Lsat_1_v5_gn_4_66820 Lactuca sativa
Manes.13G144800 Manihot esculenta
Mapoly0093s0076 Marchantia polymorpha
MBI18_g19626_MAGBIO Magnolia biondii
MCO03G390 Micromonas commoda
MD09G1244500 Malus domestica
MD17G1236500 Malus domestica
Medtr3g093760 Medicago truncatula
Medtr4g078525 Medicago truncatula
Medtr5g077340 Medicago truncatula
MELO3C013588.2 Cucumis melo
Migut.M00279 Erythranthe guttata
MSTRG.6802 Avicennia marina
Nitab4.5_0000638g0120 Nicotiana tabacum
Nitab4.5_0001184g0100 Nicotiana tabacum
Nitab4.5_0001752g0070 Nicotiana tabacum
Nitab4.5_0006194g0010 Nicotiana tabacum
Nn1g04141 Nelumbo nucifera
Nn1g04142 Nelumbo nucifera
Nn1g06483 Nelumbo nucifera
Oeu036067.1 Olea europaea
Os07g0501900 Oryza sativa ssp. japonica
Peaxi162Scf00008g00611 Petunia axillaris
Peaxi162Scf01415g00030 Petunia axillaris
PGR142G0821 Punica granatum
PGSC0003DMG400013734 Solanum tuberosum
PGSC0003DMG400032816 Solanum tuberosum
Phvul.005G102100 Phaseolus vulgaris
Phvul.011G119730 Phaseolus vulgaris
Potri.001G400600 Populus trichocarpa
Potri.007G139300 Populus trichocarpa
Potri.017G012600 Populus trichocarpa
Pp3c18_8870 Physcomitrium patens
Pp3c21_16510 Physcomitrium patens
Prupe.3G139300 Prunus persica
Psat7g168720 Pisum sativum
PSO541G1897 Papaver somniferum
PSO675G5152 Papaver somniferum
QL08p039658 Quercus lobata
RcHm_v2.0_Chr2g0127681 Rosa chinensis
Rhsim06G0139400 Rhododendron simsii
Sc21g0003070 Simmondsia chinensis
Sed0007610 Sechium edule
Sed0026522 Sechium edule
SEGI_11328 Sequoiadendron giganteum
SEGI_25482 Sequoiadendron giganteum
SEGI_31944 Sequoiadendron giganteum
SGA_v2.0_scaffold34G13945 Striga asiatica
SGA_v2.0_scaffold4316G54468 Striga asiatica
SGA_v2.0_scaffold70G23386 Striga asiatica
SGA_v2.0_scaffold70G23519 Striga asiatica
SMO351G0175 Selaginella moellendorffii
Solyc07g053850.3 Solanum lycopersicum
Solyc12g005470.2 Solanum lycopersicum
Sopen07g027820 Solanum pennellii
Sopen12g001470 Solanum pennellii
Sp3g33900 Schrenkiella parvula
Sp7g26330 Schrenkiella parvula
TAR626G1453 Trochodendron aralioides
TAR627G0070 Trochodendron aralioides
TAR627G0937 Trochodendron aralioides
THA.LOC104804057 Tarenaya hassleriana
THA.LOC104824696 Tarenaya hassleriana
Thecc.02G182400 Theobroma cacao
Thhalv10002192m.g Eutrema salsugineum
Thhalv10024798m.g Eutrema salsugineum
TPR.G10974 Trifolium pratense
TPR.G2846 Trifolium pratense
TWI23G0225 Tripterygium wilfordii
TWI59G0686 Tripterygium wilfordii
unitig_22.g5828 Utricularia gibba
vmacro12326 Vaccinium macrocarpon
VMungo1080G0203 Vigna mungo
Zm00001eb322160 Zea mays

User provided reference genes

Program Settings