Gene: AT4G28370

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G28370
  • Transcript Identifier AT4G28370.1
  • Gene Type Coding gene
  • Location Chr4 : 14035016-14039122 : positive

Gene Family Information

  • ID HOM05D004354
  • #Genes/#Species 164/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G28370.1
  • Alias FLY1,FLYING SAUCER 1
  • uniprot Q5PP23

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20650.2); Has 309 Blast hits to 308 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 25; Plants - 165; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0009827
IMP
Gene Ontologyplant-type cell wall modification1
GO:0048363
IMP
Gene Ontologymucilage pectin metabolic process1
GO:0080001
IMP
Gene Ontologymucilage extrusion from seed coat1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0012505
IEA
GOA Databaseendomembrane system
GO:0012505
IDA
Gene Ontologyendomembrane system1
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR011016 Zinc finger, RING-CH-type
Mapman id Description
19.2.2.1.4.3.8 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (FLY)