Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p42920 Brassica napus
A05p26020 Brassica napus
Aa31LG3G2350 Aethionema arabicum
Actinidia32414 Actinidia chinensis
Actinidia40129 Actinidia chinensis
AL3G36980 Arabidopsis lyrata
Aqoxy2G03437 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea
AT3G22680 Arabidopsis thaliana
ATR0665G390 Amborella trichopoda
Atru.chr1.2916 Acer truncatum
Atru.chr1.2920 Acer truncatum
Atru.chr4.2392 Acer truncatum
Atru.chr4.2417 Acer truncatum
Atru.chr7.913 Acer truncatum
AUR62001087 Chenopodium quinoa
AUR62001090 Chenopodium quinoa
AUR62008916 Chenopodium quinoa
BcaB03g14654 Brassica carinata
BcaB06g26379 Brassica carinata
BcaC01g03429 Brassica carinata
BcaC01g03430 Brassica carinata
BcaC05g28028 Brassica carinata
BolC3t17535H Brassica oleracea
BolC5t32785H Brassica oleracea
BraA03t13436Z Brassica rapa
BraA05t21487Z Brassica rapa
C03p52670 Brassica napus
C05p40440 Brassica napus
CAN.G1402.3 Capsicum annuum
CANSAT78G1519 Cannabis sativa
CARHR098560 Cardamine hirsuta
Carub.0003s2284 Capsella rubella
Ca_12246_v3 Cicer arietinum L.
Ca_24412_v3 Cicer arietinum L.
Ca_24413_v3 Cicer arietinum L.
Ca_30960_v3 Cicer arietinum L.
Cc10_g08560 Coffea canephora
CDE07G0031 Ceratophyllum demersum
Cfa001472 Carpinus fangiana
Cfa008463 Carpinus fangiana
Ciclev10005993m.g Citrus clementina
CiPaw.02G122700 Carya illinoinensis
ClCG05G004990 Citrullus lanatus
COL.COLO4_15044 Corchorus olitorius
COL.COLO4_21526 Corchorus olitorius
CsaV3_3G013040 Cucumis sativus L.
CSS0034976 Camellia sinensis var. sinensis
CSS0045006 Camellia sinensis var. sinensis
DCAR_031726 Daucus carota
Dinv03045 Davidia involucrata
Dinv25939 Davidia involucrata
Duzib114G0324 Durio zibethinus
Duzib212G0360 Durio zibethinus
ECA233G0410 Erigeron canadensis
ECA247G1582 Erigeron canadensis
Eucgr.H03428 Eucalyptus grandis
FAN08G0419 Fragaria x ananassa
FAN12G2319 Fragaria x ananassa
FAN13G2545 Fragaria x ananassa
FAN18G3642 Fragaria x ananassa
FAN22G0369 Fragaria x ananassa
FvH4_4g00760 Fragaria vesca
FvH4_5g32450 Fragaria vesca
Glyma.01G235900 Glycine max
Glyma.11G007300 Glycine max
Gohir.A10G118400 Gossypium hirsutum
Gohir.D10G148300 Gossypium hirsutum
Gohir.D10G229700 Gossypium hirsutum
Gorai.011G165600 Gossypium raimondii
GSVIVG01018017001 Vitis vinifera
HanXRQChr08g0219391 Helianthus annuus
Haze_11210 Corylus avellana
Haze_17068 Corylus avellana
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla
HPP92_009615 Vanilla planifolia
Lalb_Chr05g0211101 Lupinus albus
Lalb_Chr10g0091621 Lupinus albus
Lalb_Chr16g0376451 Lupinus albus
Lj1g0009372 Lotus japonicus
Lj1g0011366 Lotus japonicus
Lj1g0019332 Lotus japonicus
Lj3A731T58 Lonicera japonica
LjContig00408g0013113 Lotus japonicus
Lsat_1_v5_gn_8_21341 Lactuca sativa
Manes.03G175300 Manihot esculenta
Manes.12G002301 Manihot esculenta
Manes.15G031200 Manihot esculenta
MD16G1197500 Malus domestica
Medtr5g006580 Medicago truncatula
Medtr5g006600 Medicago truncatula
Medtr5g006610 Medicago truncatula
MELO3C006513.2 Cucumis melo
Migut.G00365 Erythranthe guttata
MSTRG.4047 Avicennia marina
Nitab4.5_0000050g0260 Nicotiana tabacum
Nitab4.5_0000085g0360 Nicotiana tabacum
Nitab4.5_0001547g0030 Nicotiana tabacum
Nitab4.5_0001792g0010 Nicotiana tabacum
Nn1g02390 Nelumbo nucifera
Nn6g35138 Nelumbo nucifera
Peaxi162Scf00092g00016 Petunia axillaris
Peaxi162Scf00245g00106 Petunia axillaris
PGR129G0008 Punica granatum
PGR142G1722 Punica granatum
PGSC0003DMG400013771 Solanum tuberosum
PGSC0003DMG400032265 Solanum tuberosum
PGSC0003DMG400032269 Solanum tuberosum
PGSC0003DMG400039476 Solanum tuberosum
PGSC0003DMG400039782 Solanum tuberosum
PGSC0003DMG400040737 Solanum tuberosum
PGSC0003DMG401028774 Solanum tuberosum
PGSC0003DMG402028774 Solanum tuberosum
Phvul.002G043400 Phaseolus vulgaris
Phvul.008G010500 Phaseolus vulgaris
Potri.008G076500 Populus trichocarpa
Potri.008G155800 Populus trichocarpa
Potri.010G083751 Populus trichocarpa
Prupe.1G018500 Prunus persica
Prupe.2G235500 Prunus persica
Psat2g190440 Pisum sativum
Psat2g190480 Pisum sativum
PSO170G4884 Papaver somniferum
PSO210G5857 Papaver somniferum
QL06p001566 Quercus lobata
QL08p059729 Quercus lobata
RcHm_v2.0_Chr1g0367131 Rosa chinensis
RcHm_v2.0_Chr4g0407591 Rosa chinensis
Rhsim02G0027200 Rhododendron simsii
Rhsim03G0003800 Rhododendron simsii
Rhsim04G0199500 Rhododendron simsii
Sabra08G0118600 Salix brachista
Sabra10G0059200 Salix brachista
SalBow2G0844 Salvia bowleyana
SalBow2G2347 Salvia bowleyana
Sc19g0004030 Simmondsia chinensis
Sed0012407 Sechium edule
Sed0024336 Sechium edule
SGA_v2.0_scaffold191G40487 Striga asiatica
Solyc09g082420.1 Solanum lycopersicum
Solyc09g082430.1 Solanum lycopersicum
Solyc09g082440.1 Solanum lycopersicum
Solyc09g082480.2 Solanum lycopersicum
Solyc10g045190.3 Solanum lycopersicum
Sopen09g031290 Solanum pennellii
Sopen09g031300 Solanum pennellii
Sopen09g031340 Solanum pennellii
Sopen10g014270 Solanum pennellii
Sp3g20440 Schrenkiella parvula
TAR362G0393 Trochodendron aralioides
TAR633G0827 Trochodendron aralioides
THA.LOC104803042 Tarenaya hassleriana
THA.LOC104808564 Tarenaya hassleriana
Thhalv10017318m.g Eutrema salsugineum
Thhalv10021679m.g Eutrema salsugineum
Thhalv10029384m.g Eutrema salsugineum
TPR.G37866 Trifolium pratense
TPR.G37887 Trifolium pratense
TWI53G1349 Tripterygium wilfordii
TWI73G1209 Tripterygium wilfordii
unitig_22.g6822 Utricularia gibba
vmacro15360 Vaccinium macrocarpon
VMungo0251G0090 Vigna mungo
VMungo1383G1788 Vigna mungo
Zm00001eb197880 Zea mays
Zm00001eb275620 Zea mays

User provided reference genes

Program Settings