Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p30190 Brassica napus
A09p08350 Brassica napus
Aa31LG1G18370 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis
Actinidia08890 Actinidia chinensis
Actinidia18331 Actinidia chinensis
Actinidia36826 Actinidia chinensis
Actinidia36827 Actinidia chinensis
AL5G28210 Arabidopsis lyrata
AL8G40650 Arabidopsis lyrata
Aqoxy3G01668 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IMIB52 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea
AT3G48730 Arabidopsis thaliana
AT5G63570 Arabidopsis thaliana
ATR0582G244 Amborella trichopoda
Atru.chr6.1872 Acer truncatum
AUR62005532 Chenopodium quinoa
AUR62029557 Chenopodium quinoa
AUR62029558 Chenopodium quinoa
AUR62029559 Chenopodium quinoa
AUR62029560 Chenopodium quinoa
AUR62034822 Chenopodium quinoa
BcaB02g09750 Brassica carinata
BcaB04g19926 Brassica carinata
BcaC01g02611 Brassica carinata
BcaC04g23339 Brassica carinata
BolC3t18541H Brassica oleracea
BolC9t53854H Brassica oleracea
BraA06t25970Z Brassica rapa
BraA09t36484Z Brassica rapa
C03p62870 Brassica napus
C09p09420 Brassica napus
CAN.G619.6 Capsicum annuum
CARHR277440 Cardamine hirsuta
Carub.0005s1489 Capsella rubella
Carub.0008s2430 Capsella rubella
Ca_15293_v3 Cicer arietinum L.
CBR_g49915 Chara braunii
Cc10_g12640 Coffea canephora
CDE02G1094 Ceratophyllum demersum
CDE05G1664 Ceratophyllum demersum
CDE11G0578 Ceratophyllum demersum
Cfa018748 Carpinus fangiana
Cfa018749 Carpinus fangiana
Ciclev10031414m.g Citrus clementina
CiPaw.11G003700 Carya illinoinensis
ClCG09G016340 Citrullus lanatus
Cpa.g.sc4.152 Carica papaya
Cpa.g.sc4.153 Carica papaya
Cre03.g158000 Chlamydomonas reinhardtii
CsaV3_7G007260 Cucumis sativus L.
CSS0005977 Camellia sinensis var. sinensis
CSS0020466 Camellia sinensis var. sinensis
CSS0032985 Camellia sinensis var. sinensis
CSS0046398 Camellia sinensis var. sinensis
DCAR_021646 Daucus carota
Dinv11203 Davidia involucrata
Dinv23184 Davidia involucrata
Duzib068G0759 Durio zibethinus
Duzib084G0440 Durio zibethinus
Duzib205G0778 Durio zibethinus
ECA232G0449 Erigeron canadensis
ECA247G3132 Erigeron canadensis
EL10Ac5g11355 Beta vulgaris
Eucgr.K00727 Eucalyptus grandis
FAN04G0399 Fragaria x ananassa
FAN08G1339 Fragaria x ananassa
FAN13G0496 Fragaria x ananassa
FAN18G1589 Fragaria x ananassa
FvH4_5g08950 Fragaria vesca
Glyma.04G002900 Glycine max
Glyma.06G002900 Glycine max
Glyma.14G221932 Glycine max
Gohir.A03G053920 Gossypium hirsutum
Gohir.A03G054100 Gossypium hirsutum
Gohir.A07G048500 Gossypium hirsutum
Gohir.D03G112900 Gossypium hirsutum
Gohir.D03G112950 Gossypium hirsutum
Gohir.D07G052800 Gossypium hirsutum
Gorai.001G055800 Gossypium raimondii
Gorai.003G119100 Gossypium raimondii
GSVIVG01008589001 Vitis vinifera
HanXRQChr02g0034141 Helianthus annuus
HanXRQChr09g0273511 Helianthus annuus
HanXRQChr16g0498371 Helianthus annuus
Haze_07185 Corylus avellana
Haze_07186 Corylus avellana
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla
HPP92_000338 Vanilla planifolia
Hund02468 Selenicereus undatus
Lalb_Chr08g0246741 Lupinus albus
Lalb_Chr19g0131561 Lupinus albus
Lj1g0022155 Lotus japonicus
Lj9C482T3 Lonicera japonica
Lsat_1_v5_gn_1_32701 Lactuca sativa
Manes.06G122800 Manihot esculenta
Manes.14G048100 Manihot esculenta
Mapoly0094s0038 Marchantia polymorpha
MBI04_g30114_MAGBIO Magnolia biondii
MBI04_g30438_MAGBIO Magnolia biondii
MBI11_g13058_MAGBIO Magnolia biondii
MCO04G178 Micromonas commoda
MCO14G474 Micromonas commoda
MD06G1136900 Malus domestica
MD14G1151700 Malus domestica
Medtr3g118070 Medicago truncatula
MELO3C018572.2 Cucumis melo
Migut.E00611 Erythranthe guttata
Migut.E00706 Erythranthe guttata
MSTRG.13687 Avicennia marina
Nitab4.5_0001089g0010 Nicotiana tabacum
Nitab4.5_0002672g0010 Nicotiana tabacum
Nitab4.5_0011777g0030 Nicotiana tabacum
Nn3g16369 Nelumbo nucifera
Nn4g22230 Nelumbo nucifera
Oeu036699.1 Olea europaea
Os08g0532200 Oryza sativa ssp. japonica
Peaxi162Scf00334g00121 Petunia axillaris
Peaxi162Scf00681g00117 Petunia axillaris
PGR083G1562 Punica granatum
PGSC0003DMG400032546 Solanum tuberosum
Phvul.009G118500 Phaseolus vulgaris
Potri.012G103000 Populus trichocarpa
Potri.015G101100 Populus trichocarpa
Pp3c16_12390 Physcomitrium patens
Pp3c27_4150 Physcomitrium patens
PRCOL_00001317 Prasinoderma coloniale
Prupe.5G146800 Prunus persica
Psat3g146080 Pisum sativum
Psat5g001920 Pisum sativum
PSO017G4116 Papaver somniferum
PSO478G2355 Papaver somniferum
QL11p026924 Quercus lobata
QL11p026928 Quercus lobata
QL11p026963 Quercus lobata
QL11p027046 Quercus lobata
RcHm_v2.0_Chr7g0189421 Rosa chinensis
RcHm_v2.0_Chr7g0199581 Rosa chinensis
RcHm_v2.0_Chr7g0199591 Rosa chinensis
Rhsim08G0193500 Rhododendron simsii
Rhsim12G0177900 Rhododendron simsii
Sabra12G0075400 Salix brachista
Sabra15G0121600 Salix brachista
Sc04g0000430 Simmondsia chinensis
Sc22g0003640 Simmondsia chinensis
Sed0023678 Sechium edule
SEGI_17449 Sequoiadendron giganteum
SGA_v2.0_scaffold99G29471 Striga asiatica
SHI10683 Sapria himalayana
SMO337G0012 Selaginella moellendorffii
Solyc04g009200.3 Solanum lycopersicum
Sopen04g004330 Solanum pennellii
Sp2g26660 Schrenkiella parvula
Sp5g13290 Schrenkiella parvula
TAR371G1205 Trochodendron aralioides
TAR622G0102 Trochodendron aralioides
TAR629G2294 Trochodendron aralioides
TAR629G2661 Trochodendron aralioides
THA.LOC104818177 Tarenaya hassleriana
Thecc.03G135100 Theobroma cacao
Thhalv10004138m.g Eutrema salsugineum
Thhalv10010337m.g Eutrema salsugineum
TPR.G38501 Trifolium pratense
TWI23G0168 Tripterygium wilfordii
TWI39G0681 Tripterygium wilfordii
unitig_32.g11186 Utricularia gibba
vmacro16732 Vaccinium macrocarpon
VMungo1309G1206 Vigna mungo
Zm00001eb291360 Zea mays

User provided reference genes

Program Settings