Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p25110 Brassica napus
A09p52750 Brassica napus
Aa31LG10G14760 Aethionema arabicum
Aa31LG10G14790 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.853 Anthoceros agrestis
Actinidia11671 Actinidia chinensis
Ah.16g105270 Amaranthus hybridus
AL3G24710 Arabidopsis lyrata
AL5G42770 Arabidopsis lyrata
Aqoxy1G01544 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1PFQ5M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KJN3LK Arachis hypogaea
AT3G12990 Arabidopsis thaliana
AT3G60500 Arabidopsis thaliana
ATR0752G201 Amborella trichopoda
Atru.chr3.2652 Acer truncatum
Atru.chr3.2657 Acer truncatum
AUR62009329 Chenopodium quinoa
AUR62018231 Chenopodium quinoa
AUR62023015 Chenopodium quinoa
AUR62037770 Chenopodium quinoa
BcaB02g07413 Brassica carinata
BcaC07g42773 Brassica carinata
BcaC08g45068 Brassica carinata
BolC6t37852H Brassica oleracea
BolC8t51141H Brassica oleracea
BraA07t30153Z Brassica rapa
BraA09t40705Z Brassica rapa
C06p26770 Brassica napus
C08p35490 Brassica napus
CAN.G106.16 Capsicum annuum
CAN.G1992.1 Capsicum annuum
CANSAT11G2066 Cannabis sativa
CANSAT78G0061 Cannabis sativa
CARHR154600 Cardamine hirsuta
CARHR170880 Cardamine hirsuta
Carub.0005s1343 Capsella rubella
Ca_11510_v3 Cicer arietinum L.
CBR_g8569 Chara braunii
Cc04_g10640 Coffea canephora
CDE02G0539 Ceratophyllum demersum
CDE08G0930 Ceratophyllum demersum
Cfa009809 Carpinus fangiana
Cfa021633 Carpinus fangiana
Ciclev10015158m.g Citrus clementina
Ciclev10023701m.g Citrus clementina
CiPaw.14G117000 Carya illinoinensis
ClCG03G013080 Citrullus lanatus
COL.COLO4_36456 Corchorus olitorius
COL.COLO4_37803 Corchorus olitorius
Cpa.g.sc84.28 Carica papaya
Cre03.g175000 Chlamydomonas reinhardtii
CsaV3_1G042970 Cucumis sativus L.
CSS0013673 Camellia sinensis var. sinensis
CSS0027884 Camellia sinensis var. sinensis
CSS0032467 Camellia sinensis var. sinensis
DCAR_014859 Daucus carota
DCAR_017843 Daucus carota
Dinv26740 Davidia involucrata
Dinv30994 Davidia involucrata
Dinv31109 Davidia involucrata
Duzib128G0888 Durio zibethinus
Duzib168G2218 Durio zibethinus
ECA233G1956 Erigeron canadensis
EL10Ac2g03220 Beta vulgaris
EL10Ac2g04072 Beta vulgaris
Eucgr.H02323 Eucalyptus grandis
FAN19G1259 Fragaria x ananassa
FAN23G0329 Fragaria x ananassa
FAN26G1822 Fragaria x ananassa
FAN28G1893 Fragaria x ananassa
FvH4_1g30010 Fragaria vesca
Glyma.01G227700 Glycine max
Glyma.11G015300 Glycine max
Gohir.A02G140600 Gossypium hirsutum
Gohir.A09G112400 Gossypium hirsutum
Gohir.D03G050900 Gossypium hirsutum
Gohir.D09G109100 Gossypium hirsutum
Gorai.003G052600 Gossypium raimondii
Gorai.006G126700 Gossypium raimondii
GSVIVG01034501001 Vitis vinifera
GSVIVG01034502001 Vitis vinifera
HanXRQChr13g0401261 Helianthus annuus
HanXRQChr16g0518111 Helianthus annuus
Haze_23173 Corylus avellana
Hma1.2p1_0390F.1_g142540 Hydrangea macrophylla
HPP92_016108 Vanilla planifolia
Hund05622 Selenicereus undatus
Hund24906 Selenicereus undatus
Hund24907 Selenicereus undatus
Lalb_Chr09g0320451 Lupinus albus
Lj1A320T15 Lonicera japonica
Lj1g0026625 Lotus japonicus
Lj2A624T39 Lonicera japonica
Lju9295C0T0 Lonicera japonica
Lsat_1_v5_gn_1_129161 Lactuca sativa
Lsat_1_v5_gn_2_30141 Lactuca sativa
Lsat_1_v5_gn_6_25801 Lactuca sativa
Manes.01G181600 Manihot esculenta
Manes.02G141300 Manihot esculenta
Mapoly0005s0264 Marchantia polymorpha
MBI16_g16370_MAGBIO Magnolia biondii
MBI16_g20015_MAGBIO Magnolia biondii
MCO07G489 Micromonas commoda
MD03G1172100 Malus domestica
MD11G1189800 Malus domestica
Medtr1g063090 Medicago truncatula
Medtr2g019210 Medicago truncatula
MELO3C015172.2 Cucumis melo
Migut.N02342 Erythranthe guttata
MSTRG.12460 Avicennia marina
MSTRG.17604 Avicennia marina
Nitab4.5_0002451g0010 Nicotiana tabacum
Nitab4.5_0006617g0020 Nicotiana tabacum
Nn3g19030 Nelumbo nucifera
Nn5g30742 Nelumbo nucifera
Oeu025886.1 Olea europaea
Oeu032821.1 Olea europaea
Os02g0550700 Oryza sativa ssp. japonica
Peaxi162Scf00004g03312 Petunia axillaris
PGR042G0506 Punica granatum
Phvul.002G034700 Phaseolus vulgaris
Potri.001G253200 Populus trichocarpa
Potri.009G047500 Populus trichocarpa
Pp3c15_10030 Physcomitrium patens
PRCOL_00003091 Prasinoderma coloniale
Prupe.4G254800 Prunus persica
Psat1g189640 Pisum sativum
PSO170G4824 Papaver somniferum
PSO782G1384 Papaver somniferum
QL01p004121 Quercus lobata
RcHm_v2.0_Chr2g0134251 Rosa chinensis
RcHm_v2.0_Chr3g0492251 Rosa chinensis
Rhsim01G0192500 Rhododendron simsii
Rhsim13G0217800 Rhododendron simsii
Sabra09G0034800 Salix brachista
Sabra16G0154100 Salix brachista
SalBow8G3791 Salvia bowleyana
Sc25g0003330 Simmondsia chinensis
Sed0014327 Sechium edule
Sed0026993 Sechium edule
SEGI_37460 Sequoiadendron giganteum
SGA_v2.0_scaffold3G01479 Striga asiatica
SGA_v2.0_scaffold42G16077 Striga asiatica
SHI27493 Sapria himalayana
SMO118G0166 Selaginella moellendorffii
SMO147G0169 Selaginella moellendorffii
SMO364G0151 Selaginella moellendorffii
Solyc05g047420.4 Solanum lycopersicum
Sopen05g027750 Solanum pennellii
Sp5g02720 Schrenkiella parvula
TAR626G0501 Trochodendron aralioides
THA.LOC104811177 Tarenaya hassleriana
Thecc.05G214000 Theobroma cacao
Thecc.09G238900 Theobroma cacao
Thhalv10005979m.g Eutrema salsugineum
TPR.G11279 Trifolium pratense
TPR.G26240 Trifolium pratense
TWI32G1049 Tripterygium wilfordii
TWI34G0191 Tripterygium wilfordii
unitig_27.g24998 Utricularia gibba
vmacro04129 Vaccinium macrocarpon
vmacro04130 Vaccinium macrocarpon
vmacro04131 Vaccinium macrocarpon
vmacro10778 Vaccinium macrocarpon
VMungo1215G2741 Vigna mungo
Zm00001eb055780 Zea mays
Zm00001eb070930 Zea mays
Zm00001eb145610 Zea mays
Zm00001eb179450 Zea mays
Zm00001eb243400 Zea mays
Zm00001eb277640 Zea mays
Zm00001eb381780 Zea mays

User provided reference genes

Program Settings