Gene: SGA_v2.0_scaffold42G16077
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold42G16077
- Transcript Identifier SGA_v2.0_scaffold42T16077
- Gene Type Coding gene
- Location scaffold42 : 1464281-1467840 : negative
Gene Family Information
- ID HOM05D004058
- #Genes/#Species 173/99
- Phylogenetic origin
- ID ORTHO05D001984
- #Genes/#Species 329/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
Descriptions
- product Exosome complex component Rrp42
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0010025 | ISO | PLAZA Integrative Orthology | wax biosynthetic process | AT3G12990 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000175 | ISO | PLAZA Integrative Orthology | 3'-5'-exoribonuclease activity | AT3G12990 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000178 | IEA | InterPro | exosome (RNase complex) | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G12990 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT3G12990 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR015847 | Exoribonuclease, phosphorolytic domain 2 |
| IPR027408 | PNPase/RNase PH domain superfamily |
| IPR033100 | Exosome complex component RRP45 |
| IPR036345 | Exoribonuclease, PH domain 2 superfamily |
| IPR001247 | Exoribonuclease, phosphorolytic domain 1 |
| Mapman id | Description |
|---|---|
| 16.4.1.1.5 | RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP45 |