Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p64370 Brassica napus
A08p22280 Brassica napus
Aa31LG6G13430 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis
Actinidia12124 Actinidia chinensis
Actinidia36560 Actinidia chinensis
Ah.02g125200 Amaranthus hybridus
AL7G14420 Arabidopsis lyrata
Aqoxy6G01113 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea
AT4G36630 Arabidopsis thaliana
ATR0743G236 Amborella trichopoda
ATR0800G151 Amborella trichopoda
Atru.chr3.574 Acer truncatum
AUR62004050 Chenopodium quinoa
AUR62007565 Chenopodium quinoa
BcaB03g12382 Brassica carinata
BcaC01g00456 Brassica carinata
BolC3t20256H Brassica oleracea
BolC3t20257H Brassica oleracea
BolC3t20258H Brassica oleracea
BolC7t46602H Brassica oleracea
BraA03t15502Z Brassica rapa
BraA08t34187Z Brassica rapa
C03p80030 Brassica napus
C03p80040 Brassica napus
C07p61810 Brassica napus
CAN.G1003.4 Capsicum annuum
CAN.G358.86 Capsicum annuum
CANSAT01G0227 Cannabis sativa
CARHR244970 Cardamine hirsuta
Carub.0007s0370 Capsella rubella
Ca_22265_v3 Cicer arietinum L.
Ca_22279_v3 Cicer arietinum L.
Ca_24847_v3 Cicer arietinum L.
CBR_g34968 Chara braunii
Cc03_g03620 Coffea canephora
CDE09G0689 Ceratophyllum demersum
Cfa004306 Carpinus fangiana
Cfa008017 Carpinus fangiana
Cfa020838 Carpinus fangiana
Cfa025411 Carpinus fangiana
Ciclev10024797m.g Citrus clementina
CiPaw.01G038000 Carya illinoinensis
ClCG07G009230 Citrullus lanatus
COL.COLO4_22081 Corchorus olitorius
Cpa.g.sc1294.1 Carica papaya
Cpa.g.sc1294.3 Carica papaya
Cpa.g.sc202.3 Carica papaya
Cre06.g278124 Chlamydomonas reinhardtii
CsaV3_4G004980 Cucumis sativus L.
CsaV3_4G004990 Cucumis sativus L.
CsaV3_4G005000 Cucumis sativus L.
CsaV3_UNG172360 Cucumis sativus L.
CSS0004679 Camellia sinensis var. sinensis
CSS0025574 Camellia sinensis var. sinensis
DCAR_017291 Daucus carota
DCAR_025943 Daucus carota
Dinv39986 Davidia involucrata
Duzib147G1708 Durio zibethinus
Duzib264G0986 Durio zibethinus
ECA232G2840 Erigeron canadensis
ECA246G3379 Erigeron canadensis
EL10Ac6g15563 Beta vulgaris
Eucgr.H01269 Eucalyptus grandis
FAN19G0080 Fragaria x ananassa
FAN26G1872 Fragaria x ananassa
FAN28G2497 Fragaria x ananassa
FvH4_1g13311 Fragaria vesca
Glyma.01G176000 Glycine max
Glyma.07G199100 Glycine max
Glyma.11G068300 Glycine max
Gohir.A02G165200 Gossypium hirsutum
Gohir.A11G184400 Gossypium hirsutum
Gohir.D03G014800 Gossypium hirsutum
Gohir.D11G190900 Gossypium hirsutum
Gorai.003G015100 Gossypium raimondii
Gorai.007G203400 Gossypium raimondii
GSVIVG01018960001 Vitis vinifera
HanXRQChr09g0261471 Helianthus annuus
HanXRQChr16g0530441 Helianthus annuus
Haze_15090 Corylus avellana
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla
HPP92_004246 Vanilla planifolia
HPP92_004247 Vanilla planifolia
Hund16431 Selenicereus undatus
Lalb_Chr09g0322391 Lupinus albus
Lalb_Chr16g0388271 Lupinus albus
Lalb_Chr16g0388281 Lupinus albus
Lj1g0016074 Lotus japonicus
Lj2C453G20 Lonicera japonica
Lj2g0023524 Lotus japonicus
LjContig00448g0016984 Lotus japonicus
Lsat_1_v5_gn_3_76401 Lactuca sativa
Lsat_1_v5_gn_4_152080 Lactuca sativa
Lsat_1_v5_gn_8_105180 Lactuca sativa
Manes.02G093700 Manihot esculenta
Mapoly0160s0027 Marchantia polymorpha
MBI07_g11484_MAGBIO Magnolia biondii
MD02G1147600 Malus domestica
MD15G1261900 Malus domestica
Medtr5g020140 Medicago truncatula
Medtr8g072800 Medicago truncatula
Medtr8g077680 Medicago truncatula
MELO3C017565.2 Cucumis melo
Migut.H00988 Erythranthe guttata
Nitab4.5_0000178g0040 Nicotiana tabacum
Nitab4.5_0001385g0050 Nicotiana tabacum
Nn1g04984 Nelumbo nucifera
Nn7g37554 Nelumbo nucifera
Oeu009413.1 Olea europaea
Oeu033646.1 Olea europaea
Oeu042264.1 Olea europaea
Oeu042265.1 Olea europaea
Os03g0715500 Oryza sativa ssp. japonica
Os04g0389901 Oryza sativa ssp. japonica
Peaxi162Scf00366g00121 Petunia axillaris
PGR102G3072 Punica granatum
PGSC0003DMG400003507 Solanum tuberosum
PGSC0003DMG400027646 Solanum tuberosum
Phvul.002G030300 Phaseolus vulgaris
Potri.005G123000 Populus trichocarpa
Potri.007G025700 Populus trichocarpa
Pp3c10_5300 Physcomitrium patens
PRCOL_00006719 Prasinoderma coloniale
Prupe.7G154500 Prunus persica
Psat2g159680 Pisum sativum
Psat4g092560 Pisum sativum
PSO017G4184 Papaver somniferum
PSO541G3635 Papaver somniferum
PSO675G4195 Papaver somniferum
PSO837G0008 Papaver somniferum
QL06p046086 Quercus lobata
RcHm_v2.0_Chr2g0101101 Rosa chinensis
RcHm_v2.0_Chr2g0101111 Rosa chinensis
RcHm_v2.0_Chr2g0101581 Rosa chinensis
Rhsim02G0182400 Rhododendron simsii
Sabra07G0022700 Salix brachista
SalBow8G0583 Salvia bowleyana
Sc03g0002970 Simmondsia chinensis
Sed0003321 Sechium edule
SEGI_00418 Sequoiadendron giganteum
SEGI_13313 Sequoiadendron giganteum
SEGI_22286 Sequoiadendron giganteum
SGA_v2.0_scaffold276G46626 Striga asiatica
SHI32099 Sapria himalayana
SHI32100 Sapria himalayana
SMO145G0075 Selaginella moellendorffii
Solyc02g085220.4 Solanum lycopersicum
Solyc07g056660.4 Solanum lycopersicum
Sopen02g029920 Solanum pennellii
Sopen07g030000 Solanum pennellii
Sp7g34290 Schrenkiella parvula
TAR362G0832 Trochodendron aralioides
TAR376G0366 Trochodendron aralioides
Thecc.01G035900 Theobroma cacao
Thecc.01G036000 Theobroma cacao
Thecc.01G133800 Theobroma cacao
Thhalv10024305m.g Eutrema salsugineum
TPR.G13568 Trifolium pratense
TPR.G13573 Trifolium pratense
TPR.G13579 Trifolium pratense
TPR.G13585 Trifolium pratense
TPR.G13595 Trifolium pratense
TPR.G22289 Trifolium pratense
TPR.G34978 Trifolium pratense
TWI73G0243 Tripterygium wilfordii
unitig_52.g17587 Utricularia gibba
vmacro11086 Vaccinium macrocarpon
VMungo1215G2866 Vigna mungo
Zm00001eb055180 Zea mays

User provided reference genes

Program Settings