Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p60550 Brassica napus
A08p18880 Brassica napus
Aa31LG2G19220 Aethionema arabicum
Aa31LG7G12410 Aethionema arabicum
Aa31sc593G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis
Actinidia14151 Actinidia chinensis
AL4G14710 Arabidopsis lyrata
AL6G47194 Arabidopsis lyrata
AL7G20950 Arabidopsis lyrata
AL7G31410 Arabidopsis lyrata
Aqoxy7G02572 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea
AT4G31120 Arabidopsis thaliana
ATR0626G195 Amborella trichopoda
Atru.chr7.2713 Acer truncatum
AUR62020691 Chenopodium quinoa
AUR62028034 Chenopodium quinoa
BcaB03g12676 Brassica carinata
BcaC01g01113 Brassica carinata
BcaC09g51896 Brassica carinata
BcaC09g51897 Brassica carinata
BcaNung01543 Brassica carinata
BcaNung02721 Brassica carinata
BcaNung03411 Brassica carinata
BolC1t00770H Brassica oleracea
BolC1t00771H Brassica oleracea
BolC3t21136H Brassica oleracea
BolC7t46300H Brassica oleracea
BraA03t15094Z Brassica rapa
BraA08t33849Z Brassica rapa
C01p07840 Brassica napus
C03p88280 Brassica napus
C07p58460 Brassica napus
CAN.G940.15 Capsicum annuum
CARHR117740 Cardamine hirsuta
CARHR117750 Cardamine hirsuta
CARHR239030 Cardamine hirsuta
Carub.0004s0367 Capsella rubella
Carub.0007s0941 Capsella rubella
Ca_02459_v3 Cicer arietinum L.
Ca_12155_v3 Cicer arietinum L.
Ca_12890_v3 Cicer arietinum L.
Ca_12891_v3 Cicer arietinum L.
Ca_12894_v3 Cicer arietinum L.
Ca_12896_v3 Cicer arietinum L.
Ca_15682_v3 Cicer arietinum L.
Ca_27914_v3 Cicer arietinum L.
CBR_g50848 Chara braunii
Cc01_g20960 Coffea canephora
Cc07_g19480 Coffea canephora
CDE06G1054 Ceratophyllum demersum
Cfa013241 Carpinus fangiana
Ciclev10007631m.g Citrus clementina
CiPaw.07G215500 Carya illinoinensis
CiPaw.08G017300 Carya illinoinensis
ClCG05G017380 Citrullus lanatus
COL.COLO4_18638 Corchorus olitorius
Cpa.g.sc52.83 Carica papaya
Cre03.g176550 Chlamydomonas reinhardtii
CsaV3_3G046890 Cucumis sativus L.
CSS0001762 Camellia sinensis var. sinensis
CSS0024851 Camellia sinensis var. sinensis
DCAR_001159 Daucus carota
Dinv09449 Davidia involucrata
Dinv37477 Davidia involucrata
ECA240G2540 Erigeron canadensis
EL10Ac2g03661 Beta vulgaris
Eucgr.D02618 Eucalyptus grandis
FAN15G3026 Fragaria x ananassa
FAN20G2665 Fragaria x ananassa
FAN24G2613 Fragaria x ananassa
FAN27G1558 Fragaria x ananassa
FvH4_2g30610 Fragaria vesca
Glyma.04G074200 Glycine max
Glyma.06G075300 Glycine max
Gohir.A07G001000 Gossypium hirsutum
Gohir.D07G001400 Gossypium hirsutum
Gorai.001G001100 Gossypium raimondii
GSVIVG01035593001 Vitis vinifera
HanXRQChr03g0082341 Helianthus annuus
HanXRQChr08g0231401 Helianthus annuus
Haze_21675 Corylus avellana
Haze_26350 Corylus avellana
Haze_26428 Corylus avellana
Haze_26909 Corylus avellana
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla
HPP92_026442 Vanilla planifolia
Hund03241 Selenicereus undatus
Lalb_Chr08g0243671 Lupinus albus
Lalb_Chr08g0243681 Lupinus albus
Lalb_Chr11g0064061 Lupinus albus
Lj1g0007461 Lotus japonicus
Lj8A420G13 Lonicera japonica
Lj8C416G1 Lonicera japonica
Lsat_1_v5_gn_5_59301 Lactuca sativa
Manes.12G085100 Manihot esculenta
Mapoly0116s0029 Marchantia polymorpha
MBI13_g33580_MAGBIO Magnolia biondii
MBI13_g46508_MAGBIO Magnolia biondii
MCO04G116 Micromonas commoda
MD08G1132700 Malus domestica
MD15G1111800 Malus domestica
MD15G1112100 Malus domestica
MD15G1112600 Malus domestica
MD15G1112700 Malus domestica
Medtr3g108640 Medicago truncatula
MELO3C030447.2 Cucumis melo
Migut.E01402 Erythranthe guttata
MSTRG.13931 Avicennia marina
Nitab4.5_0000860g0110 Nicotiana tabacum
Nitab4.5_0003763g0040 Nicotiana tabacum
Nitab4.5_0020175g0010 Nicotiana tabacum
Nn7g37851 Nelumbo nucifera
Oeu002012.3 Olea europaea
Oeu057141.1 Olea europaea
Os02g0139200 Oryza sativa ssp. japonica
Peaxi162Scf00045g01452 Petunia axillaris
PGR044G2633 Punica granatum
Phvul.009G099900 Phaseolus vulgaris
Potri.006G281000 Populus trichocarpa
Potri.018G000500 Populus trichocarpa
Pp3c17_13030 Physcomitrium patens
Pp3c17_13031 Physcomitrium patens
Pp3c1_39750 Physcomitrium patens
PRCOL_00000397 Prasinoderma coloniale
Prupe.1G463300 Prunus persica
Psat0s2583g0040 Pisum sativum
PSO170G0668 Papaver somniferum
PSO455G0188 Papaver somniferum
QL12p024588 Quercus lobata
RcHm_v2.0_Chr6g0312391 Rosa chinensis
Rhsim07G0173700 Rhododendron simsii
Rhsim07G0173800 Rhododendron simsii
Sabra18G0005700 Salix brachista
SalBow8G1365 Salvia bowleyana
Sc06g0000030 Simmondsia chinensis
Sc06g0001350 Simmondsia chinensis
Sed0018239 Sechium edule
Sed0018865 Sechium edule
SEGI_26514 Sequoiadendron giganteum
SGA_v2.0_scaffold121G33039 Striga asiatica
SHI03163 Sapria himalayana
SHI03164 Sapria himalayana
SMO334G0030 Selaginella moellendorffii
SMO334G0088 Selaginella moellendorffii
Solyc08g005970.3 Solanum lycopersicum
Sopen08g001940 Solanum pennellii
Sp4g03340 Schrenkiella parvula
Sp7g29000 Schrenkiella parvula
TAR625G0977 Trochodendron aralioides
TAR636G2548 Trochodendron aralioides
THA.LOC104803893 Tarenaya hassleriana
Thecc.09G001600 Theobroma cacao
Thhalv10000136m.g Eutrema salsugineum
Thhalv10000691m.g Eutrema salsugineum
Thhalv10024653m.g Eutrema salsugineum
TPR.G12431 Trifolium pratense
TPR.G20415 Trifolium pratense
TPR.G30953 Trifolium pratense
TPR.G30955 Trifolium pratense
TPR.G30956 Trifolium pratense
TPR.G30960 Trifolium pratense
TPR.G36216 Trifolium pratense
TPR.G39898 Trifolium pratense
TWI63G1282 Tripterygium wilfordii
unitig_0.g2194 Utricularia gibba
vmacro05088 Vaccinium macrocarpon
VMungo1309G0405 Vigna mungo
VMungo1309G1102 Vigna mungo
Zm00001eb209210 Zea mays
Zm00001eb232020 Zea mays

User provided reference genes

Program Settings