Gene: AT4G31120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G31120
  • Transcript Identifier AT4G31120.1
  • Gene Type Coding gene
  • Location Chr4 : 15132185-15136568 : negative

Gene Family Information

  • ID HOM05D003985
  • #Genes/#Species 175/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G31120.1
  • symbol SKB1
  • Alias ATPRMT5,CAU1,calcium underaccumulation 1,PRMT5,PROTEIN ARGININE METHYLTRANSFERASE 5
  • uniprot Q8GWT4

Descriptions

  • Description SHK1 binding protein 1
  • Computational description SHK1 binding protein 1 (SKB1); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 957 Blast hits to 940 proteins in 238 species: Archae - 11; Bacteria - 37; Metazoa - 444; Fungi - 148; Plants - 166; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018216
IEA
GOA Databasepeptidyl-arginine methylation
GO:0018216
IEA
InterPropeptidyl-arginine methylation
GO:0035246
IEA
GOA Databasepeptidyl-arginine N-methylation
GO:0035246
IEA
InterPropeptidyl-arginine N-methylation
GO:0006479
IEA
GOA Databaseprotein methylation
GO:0006479
IEA
InterProprotein methylation
GO:0032259
IEA
GOA Databasemethylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:0019919
IEA
GOA Databasepeptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0006355
IBA
Gene Ontologyregulation of transcription, DNA-templated1
GO:0034969
IBA
Gene Ontologyhistone arginine methylation1
GO:0043985
IMP
Gene Ontologyhistone H4-R3 methylation2
GO:0010220
IMP
Gene Ontologypositive regulation of vernalization response3
GO:0009909
IMP
Gene Ontologyregulation of flower development4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016274
IEA
GOA Databaseprotein-arginine N-methyltransferase activity
GO:0016274
IEA
InterProprotein-arginine N-methyltransferase activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008168
IEA
InterPromethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008469
IBA
Gene Ontologyhistone-arginine N-methyltransferase activity1
GO:0008276
IDA
Gene Ontologyprotein methyltransferase activity4
GO:0035242
IEA
Gene Ontologyprotein-arginine omega-N asymmetric methyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
IBA
Gene Ontologycytosol1
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005634
IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007857 Protein arginine N-methyltransferase PRMT5
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR035247 PRMT5, TIM barrel domain
IPR035248 PRMT5, oligomerisation domain
IPR035075 PRMT5 arginine-N-methyltransferase
IPR025799 Protein arginine N-methyltransferase
Mapman id Description
16.2.5.3.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).recruitment to spliceosome.arginine methyltransferase (PRMT5/CAU1)
26.5.1.1 External stimuli response.drought.stomatal closure signalling.histone methylase (CAU1/PRMT5)