Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p31710 Brassica napus
A09p23310 Brassica napus
Aa31LG2G8590 Aethionema arabicum
Aa31LG8G4920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis
Actinidia18907 Actinidia chinensis
Actinidia35113 Actinidia chinensis
Actinidia37891 Actinidia chinensis
Actinidia37893 Actinidia chinensis
Ah.03g138590 Amaranthus hybridus
AL3G31220 Arabidopsis lyrata
AL5G10290 Arabidopsis lyrata
Aqoxy3G04013 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea
AT2G01330 Arabidopsis thaliana
AT3G18060 Arabidopsis thaliana
ATR0686G116 Amborella trichopoda
Atru.chr11.420 Acer truncatum
Atru.chr5.1031 Acer truncatum
Atru.chr9.1764 Acer truncatum
Atru.chr9.1765 Acer truncatum
AUR62014196 Chenopodium quinoa
AUR62041238 Chenopodium quinoa
BcaB03g13114 Brassica carinata
BcaB07g30749 Brassica carinata
BcaB07g32970 Brassica carinata
BcaC04g21593 Brassica carinata
BcaC05g28709 Brassica carinata
BolC5t33521H Brassica oleracea
BolC5t33552H Brassica oleracea
BolC9t55869H Brassica oleracea
BraA05t22004Z Brassica rapa
BraA09t37932Z Brassica rapa
C05p48110 Brassica napus
C09p30050 Brassica napus
CANSAT80G2537 Cannabis sativa
CARHR093380 Cardamine hirsuta
CARHR143850 Cardamine hirsuta
Carub.0003s1778 Capsella rubella
Carub.0005s0030 Capsella rubella
Ca_17215_v3 Cicer arietinum L.
Ca_17217_v3 Cicer arietinum L.
Ca_27465_v3 Cicer arietinum L.
CBR_g51409 Chara braunii
Cc04_g06570 Coffea canephora
Cc04_g06580 Coffea canephora
CDE04G0774 Ceratophyllum demersum
Cfa019689 Carpinus fangiana
Ciclev10007782m.g Citrus clementina
Ciclev10014635m.g Citrus clementina
CiPaw.15G139700 Carya illinoinensis
ClCG06G014440 Citrullus lanatus
COL.COLO4_20464 Corchorus olitorius
COL.COLO4_22316 Corchorus olitorius
COL.COLO4_22318 Corchorus olitorius
Cpa.g.sc211.2 Carica papaya
Cpa.g.sc3.440 Carica papaya
CsaV3_1G004220 Cucumis sativus L.
CSS0005322 Camellia sinensis var. sinensis
DCAR_014770 Daucus carota
DCAR_023230 Daucus carota
Dinv05158 Davidia involucrata
Dinv26502 Davidia involucrata
ECA234G1883 Erigeron canadensis
EL10Ac6g14239 Beta vulgaris
Eucgr.K02263 Eucalyptus grandis
FAN04G3226 Fragaria x ananassa
FAN08G2535 Fragaria x ananassa
FAN13G1787 Fragaria x ananassa
FAN18G0775 Fragaria x ananassa
FvH4_5g17110 Fragaria vesca
Glyma.05G243900 Glycine max
Glyma.08G051900 Glycine max
Glyma.20G126400 Glycine max
Gohir.A01G153300 Gossypium hirsutum
Gohir.A11G004000 Gossypium hirsutum
Gohir.D01G099700 Gossypium hirsutum
Gohir.D11G003500 Gossypium hirsutum
Gorai.002G180400 Gossypium raimondii
Gorai.007G004500 Gossypium raimondii
GSVIVG01008399001 Vitis vinifera
HanXRQChr10g0314661 Helianthus annuus
Haze_18797 Corylus avellana
Haze_27019 Corylus avellana
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla
HPP92_000152 Vanilla planifolia
Hund20686 Selenicereus undatus
Hund20688 Selenicereus undatus
Hund24990 Selenicereus undatus
Lalb_Chr05g0221841 Lupinus albus
Lalb_Chr06g0165541 Lupinus albus
Lalb_Chr06g0165551 Lupinus albus
Lj2A556T29 Lonicera japonica
Lj4g0027787 Lotus japonicus
Lj5g0018825 Lotus japonicus
Lj6A27G8 Lonicera japonica
Lsat_1_v5_gn_5_91461 Lactuca sativa
Manes.06G008300 Manihot esculenta
Manes.15G126700 Manihot esculenta
Mapoly0025s0096 Marchantia polymorpha
MCO02G121 Micromonas commoda
MD06G1229500 Malus domestica
MD14G1234400 Malus domestica
Medtr1g107560 Medicago truncatula
Medtr8g106820 Medicago truncatula
MELO3C017347.2 Cucumis melo
Migut.D01456 Erythranthe guttata
MSTRG.9290 Avicennia marina
Nitab4.5_0001158g0090 Nicotiana tabacum
Nitab4.5_0001644g0090 Nicotiana tabacum
Nn4g24112 Nelumbo nucifera
Oeu013618.1 Olea europaea
Oeu031786.1 Olea europaea
Oeu031790.1 Olea europaea
Oeu061232.2 Olea europaea
Os01g0125800 Oryza sativa ssp. japonica
Peaxi162Scf00683g00157 Petunia axillaris
PGR083G2578 Punica granatum
PGSC0003DMG400005655 Solanum tuberosum
Phvul.002G327600 Phaseolus vulgaris
Phvul.007G038100 Phaseolus vulgaris
Potri.012G049200 Populus trichocarpa
Potri.015G041200 Populus trichocarpa
Pp3c3_9960 Physcomitrium patens
PRCOL_00004882 Prasinoderma coloniale
Prupe.5G230600 Prunus persica
Psat6g220280 Pisum sativum
Psat7g000120 Pisum sativum
PSO063G1948 Papaver somniferum
PSO782G1387 Papaver somniferum
QL10p027883 Quercus lobata
RcHm_v2.0_Chr5g0062751 Rosa chinensis
RcHm_v2.0_Chr6g0266701 Rosa chinensis
RcHm_v2.0_Chr6g0295791 Rosa chinensis
RcHm_v2.0_Chr7g0178701 Rosa chinensis
Rhsim12G0139700 Rhododendron simsii
Sabra12G0034600 Salix brachista
Sabra15G0055900 Salix brachista
Sabra15G0063600 Salix brachista
Sc11g0004100 Simmondsia chinensis
Sed0001638 Sechium edule
Sed0014282 Sechium edule
SEGI_26510 Sequoiadendron giganteum
SGA_v2.0_scaffold25G10972 Striga asiatica
SMO298G0047 Selaginella moellendorffii
Solyc03g119090.3 Solanum lycopersicum
Sopen03g037980 Solanum pennellii
Sp2g12780 Schrenkiella parvula
Sp3g16180 Schrenkiella parvula
TAR374G0009 Trochodendron aralioides
TAR622G0688 Trochodendron aralioides
THA.LOC104820357 Tarenaya hassleriana
THA.LOC104823875 Tarenaya hassleriana
Thecc.02G279800 Theobroma cacao
Thecc.03G050300 Theobroma cacao
Thhalv10000821m.g Eutrema salsugineum
Thhalv10020321m.g Eutrema salsugineum
TPR.G12747 Trifolium pratense
TPR.G12969 Trifolium pratense
TPR.G13862 Trifolium pratense
TWI15G0606 Tripterygium wilfordii
TWI81G0555 Tripterygium wilfordii
unitig_899.g15402 Utricularia gibba
vmacro16423 Vaccinium macrocarpon
VMungo0251G3447 Vigna mungo
VMungo0720G1874 Vigna mungo
Zm00001eb076360 Zea mays
Zm00001eb125700 Zea mays
Zm00001eb221950 Zea mays
Zm00001eb265330 Zea mays
Zm00001eb287030 Zea mays
Zm00001eb334960 Zea mays
Zm00001eb337090 Zea mays
Zm00001eb369430 Zea mays
Zm00001eb396840 Zea mays

User provided reference genes

Program Settings