Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18190 Brassica napus
A03p57020 Brassica napus
A08p20580 Brassica napus
A08p20590 Brassica napus
Aa31LG5G10360 Aethionema arabicum
Aa31LG5G10380 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis
Actinidia09908 Actinidia chinensis
Ah.04g165790 Amaranthus hybridus
AL3G48190 Arabidopsis lyrata
AL4G12480 Arabidopsis lyrata
AL7G25800 Arabidopsis lyrata
Aqoxy1G03269 Aquilegia oxysepala
Aqoxy1G03270 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea
AT1G62190 Arabidopsis thaliana
AT2G22890 Arabidopsis thaliana
AT4G27030 Arabidopsis thaliana
ATR0752G116 Amborella trichopoda
Atru.chr2.3337 Acer truncatum
Atru.chr2.3340 Acer truncatum
Atru.chr2.3378 Acer truncatum
AUR62015741 Chenopodium quinoa
AUR62015742 Chenopodium quinoa
AUR62020469 Chenopodium quinoa
BcaB03g12523 Brassica carinata
BcaB03g12524 Brassica carinata
BcaC06g32715 Brassica carinata
BcaC06g32716 Brassica carinata
BcaC07g38264 Brassica carinata
BcaC07g38266 Brassica carinata
BcaC07g38267 Brassica carinata
BcaC09g50623 Brassica carinata
BolC1t02250H Brassica oleracea
BolC7t46007H Brassica oleracea
BolC8t48689H Brassica oleracea
BolC8t48691H Brassica oleracea
BolC8t48692H Brassica oleracea
BraA01t01774Z Brassica rapa
BraA03t14771Z Brassica rapa
BraA08t34014Z Brassica rapa
BraA08t34015Z Brassica rapa
C01p23150 Brassica napus
C01p23190 Brassica napus
C07p55050 Brassica napus
C08p10100 Brassica napus
C08p10120 Brassica napus
C08p10140 Brassica napus
CAN.G337.115 Capsicum annuum
CANSAT11G0562 Cannabis sativa
CANSAT11G1176 Cannabis sativa
CANSAT64G1454 Cannabis sativa
CARHR049940 Cardamine hirsuta
CARHR234700 Cardamine hirsuta
Carub.0002s0286 Capsella rubella
Carub.0004s0202 Capsella rubella
Carub.0007s1381 Capsella rubella
Ca_14721_v3 Cicer arietinum L.
CBR_g30523 Chara braunii
Cc05_g13590 Coffea canephora
CDE05G0277 Ceratophyllum demersum
CDE05G0281 Ceratophyllum demersum
Cfa009708 Carpinus fangiana
Cfa009711 Carpinus fangiana
Cfa020372 Carpinus fangiana
Ciclev10009005m.g Citrus clementina
CiPaw.11G187800 Carya illinoinensis
ClCG10G005490 Citrullus lanatus
COL.COLO4_07218 Corchorus olitorius
COL.COLO4_07219 Corchorus olitorius
COL.COLO4_09644 Corchorus olitorius
Cpa.g.sc97.27 Carica papaya
Cre16.g673001 Chlamydomonas reinhardtii
CsaV3_3G005230 Cucumis sativus L.
CSS0050113 Camellia sinensis var. sinensis
DCAR_008677 Daucus carota
Dinv40740 Davidia involucrata
Duzib213G0550 Durio zibethinus
ECA246G1165 Erigeron canadensis
EL10Ac4g07844 Beta vulgaris
Eucgr.F00963 Eucalyptus grandis
Eucgr.L01106 Eucalyptus grandis
FAN11G0561 Fragaria x ananassa
FAN11G2983 Fragaria x ananassa
FAN16G2486 Fragaria x ananassa
FAN21G1679 Fragaria x ananassa
FAN21G3611 Fragaria x ananassa
FvH4_3g22391 Fragaria vesca
FvH4_3g22400 Fragaria vesca
Glyma.08G314700 Glycine max
Glyma.18G099500 Glycine max
Gohir.A01G078700 Gossypium hirsutum
Gohir.D01G065800 Gossypium hirsutum
Gorai.002G087700 Gossypium raimondii
HanXRQChr05g0159031 Helianthus annuus
Haze_09657 Corylus avellana
Haze_23061 Corylus avellana
Haze_23062 Corylus avellana
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla
Lalb_Chr02g0155621 Lupinus albus
Lalb_Chr06g0171911 Lupinus albus
Lj1C870G17 Lonicera japonica
Lj6g0018199 Lotus japonicus
Lj6g0018599 Lotus japonicus
Lsat_1_v5_gn_5_5140 Lactuca sativa
Lsat_1_v5_gn_5_6120 Lactuca sativa
Lsat_1_v5_gn_5_6180 Lactuca sativa
Manes.15G073200 Manihot esculenta
Mapoly0034s0071 Marchantia polymorpha
MCO05G373 Micromonas commoda
MD03G1205300 Malus domestica
MD11G1221200 Malus domestica
Medtr3g051220 Medicago truncatula
MELO3C025390.2 Cucumis melo
Migut.H01834 Erythranthe guttata
Migut.H01835 Erythranthe guttata
Migut.H01836 Erythranthe guttata
Migut.M01779 Erythranthe guttata
MSTRG.6909 Avicennia marina
Nitab4.5_0001604g0100 Nicotiana tabacum
Nitab4.5_0004336g0020 Nicotiana tabacum
Nn1g03571 Nelumbo nucifera
Oeu042929.1 Olea europaea
Oeu062594.1 Olea europaea
Os08g0187900 Oryza sativa ssp. japonica
Peaxi162Scf00450g00075 Petunia axillaris
PGR083G2742 Punica granatum
PGSC0003DMG400004435 Solanum tuberosum
PGSC0003DMG400022225 Solanum tuberosum
Phvul.006G040800 Phaseolus vulgaris
Potri.001G424700 Populus trichocarpa
Pp3c13_12570 Physcomitrium patens
PRCOL_00003954 Prasinoderma coloniale
Prupe.4G210500 Prunus persica
Prupe.4G210600 Prunus persica
Psat5g180680 Pisum sativum
PSO541G1838 Papaver somniferum
PSO675G5012 Papaver somniferum
QL08p011429 Quercus lobata
QL08p011463 Quercus lobata
QL08p011634 Quercus lobata
QL08p011649 Quercus lobata
QL09p032903 Quercus lobata
RcHm_v2.0_Chr5g0039071 Rosa chinensis
Rhsim06G0216100 Rhododendron simsii
Sabra11G0123500 Salix brachista
Sabra16G0288300 Salix brachista
Sc03g0008670 Simmondsia chinensis
Sc03g0008680 Simmondsia chinensis
Sc03g0008690 Simmondsia chinensis
Sed0028072 Sechium edule
SEGI_34207 Sequoiadendron giganteum
SGA_v2.0_scaffold172G38997 Striga asiatica
SGA_v2.0_scaffold9G05067 Striga asiatica
SGA_v2.0_scaffold9G05070 Striga asiatica
SMO364G0503 Selaginella moellendorffii
Solyc07g064410.1 Solanum lycopersicum
Sopen07g032620 Solanum pennellii
Sp7g24990 Schrenkiella parvula
Sp7g25000 Schrenkiella parvula
Sp7g25010 Schrenkiella parvula
TAR626G0527 Trochodendron aralioides
THA.LOC104809192 Tarenaya hassleriana
Thecc.07G042800 Theobroma cacao
Thhalv10025879m.g Eutrema salsugineum
Thhalv10026787m.g Eutrema salsugineum
Thhalv10027264m.g Eutrema salsugineum
TPR.G16574 Trifolium pratense
TWI38G0918 Tripterygium wilfordii
unitig_26.g9960 Utricularia gibba
unitig_62.g23279 Utricularia gibba
unitig_749.g13966 Utricularia gibba
vmacro11734 Vaccinium macrocarpon
vmacro11735 Vaccinium macrocarpon
VMungo0540G1582 Vigna mungo
Zm00001eb413170 Zea mays
Zm00001eb413200 Zea mays

User provided reference genes

Program Settings