Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p15700 Brassica napus
A03p27580 Brassica napus
A03p55280 Brassica napus
Aa31LG3G6740 Aethionema arabicum
Aa31LG4G9470 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis
Actinidia00183 Actinidia chinensis
Actinidia02753 Actinidia chinensis
Actinidia06473 Actinidia chinensis
Actinidia26166 Actinidia chinensis
Actinidia39010 Actinidia chinensis
Ah.03g136840 Amaranthus hybridus
AL3G33580 Arabidopsis lyrata
AL7G28890 Arabidopsis lyrata
AL8G23900 Arabidopsis lyrata
Aqoxy5G03033 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea
AT4G24330 Arabidopsis thaliana
AT5G49945 Arabidopsis thaliana
ATR0584G077 Amborella trichopoda
Atru.chr6.781 Acer truncatum
Atru.chr6.812 Acer truncatum
AUR62040618 Chenopodium quinoa
AUR62041951 Chenopodium quinoa
BcaB01g02930 Brassica carinata
BcaC01g04841 Brassica carinata
BcaC01g04842 Brassica carinata
BcaC06g32885 Brassica carinata
BcaC09g50878 Brassica carinata
BcaNung05636 Brassica carinata
BolC1t01894H Brassica oleracea
BolC3t15651H Brassica oleracea
BolC7t45848H Brassica oleracea
BolC8t48574H Brassica oleracea
BraA01t01508Z Brassica rapa
BraA03t11971Z Brassica rapa
BraA03t14587Z Brassica rapa
C01p19670 Brassica napus
C03p33290 Brassica napus
C07p53570 Brassica napus
CAN.G386.33 Capsicum annuum
CAN.G697.8 Capsicum annuum
CAN.G798.55 Capsicum annuum
CAN.G963.3 Capsicum annuum
CANSAT54G0877 Cannabis sativa
CARHR216310 Cardamine hirsuta
CARHR231750 Cardamine hirsuta
CARHR231760 Cardamine hirsuta
CARHR258770 Cardamine hirsuta
Carub.0007s1672 Capsella rubella
Carub.0008s0983 Capsella rubella
Ca_00045_v3 Cicer arietinum L.
CBR_g4722 Chara braunii
Cc02_g23030 Coffea canephora
CDE06G0202 Ceratophyllum demersum
CDE08G0951 Ceratophyllum demersum
Cfa004507 Carpinus fangiana
Ciclev10000945m.g Citrus clementina
CiPaw.05G005700 Carya illinoinensis
CiPaw.06G173300 Carya illinoinensis
ClCG10G007000 Citrullus lanatus
COL.COLO4_08942 Corchorus olitorius
COL.COLO4_17737 Corchorus olitorius
Cpa.g.sc30.25 Carica papaya
Cre02.g106300 Chlamydomonas reinhardtii
CsaV3_3G006350 Cucumis sativus L.
CSS0002231 Camellia sinensis var. sinensis
CSS0013131 Camellia sinensis var. sinensis
CSS0019842 Camellia sinensis var. sinensis
CSS0020156 Camellia sinensis var. sinensis
CSS0030901 Camellia sinensis var. sinensis
DCAR_006681 Daucus carota
Dinv07476 Davidia involucrata
Dinv19400 Davidia involucrata
Duzib052G0643 Durio zibethinus
Duzib132G1049 Durio zibethinus
ECA236G3450 Erigeron canadensis
ECA240G1679 Erigeron canadensis
EL10Ac6g14144 Beta vulgaris
Eucgr.I02754 Eucalyptus grandis
Eucgr.L02024 Eucalyptus grandis
Eucgr.L02026 Eucalyptus grandis
FAN04G1563 Fragaria x ananassa
FAN18G2864 Fragaria x ananassa
FvH4_5g28340 Fragaria vesca
Glyma.12G167500 Glycine max
Glyma.16G003600 Glycine max
Gohir.A01G182900 Gossypium hirsutum
Gohir.A04G132700 Gossypium hirsutum
Gohir.D01G174000 Gossypium hirsutum
Gohir.D04G176300 Gossypium hirsutum
Gorai.002G216100 Gossypium raimondii
Gorai.012G167900 Gossypium raimondii
GSVIVG01023266001 Vitis vinifera
HanXRQChr06g0181341 Helianthus annuus
HanXRQChr07g0187361 Helianthus annuus
HanXRQChr16g0509421 Helianthus annuus
Haze_10058 Corylus avellana
Haze_10061 Corylus avellana
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla
HPP92_013757 Vanilla planifolia
Hund15482 Selenicereus undatus
Lalb_Chr15g0090731 Lupinus albus
Lalb_Chr20g0123671 Lupinus albus
Lj5C262G4 Lonicera japonica
Lj6g0024462 Lotus japonicus
Lj6g0026503 Lotus japonicus
Lj9C300G1 Lonicera japonica
Lsat_1_v5_gn_7_76521 Lactuca sativa
Lsat_1_v5_gn_9_121141 Lactuca sativa
Manes.07G023200 Manihot esculenta
Manes.10G119400 Manihot esculenta
Mapoly0037s0012 Marchantia polymorpha
MBI09_g03430_MAGBIO Magnolia biondii
MCO13G620 Micromonas commoda
MD08G1240800 Malus domestica
MD15G1434000 Malus domestica
Medtr2g005930 Medicago truncatula
MELO3C016507.2 Cucumis melo
Migut.B00784 Erythranthe guttata
Migut.N00826 Erythranthe guttata
MSTRG.16495 Avicennia marina
MSTRG.5212 Avicennia marina
Nitab4.5_0000948g0030 Nicotiana tabacum
Nitab4.5_0002596g0090 Nicotiana tabacum
Nn1g08458 Nelumbo nucifera
Nn5g27797 Nelumbo nucifera
Oeu000132.1 Olea europaea
Oeu023407.1 Olea europaea
Os05g0432400 Oryza sativa ssp. japonica
Peaxi162Scf00011g00941 Petunia axillaris
PGR142G2211 Punica granatum
PGSC0003DMG400024923 Solanum tuberosum
Phvul.006G218500 Phaseolus vulgaris
Potri.004G223000 Populus trichocarpa
Pp3c5_6620 Physcomitrium patens
Prupe.1G577500 Prunus persica
Psat1g223280 Pisum sativum
PSO170G6240 Papaver somniferum
PSO782G4904 Papaver somniferum
QL02p100243 Quercus lobata
RcHm_v2.0_Chr7g0220701 Rosa chinensis
Rhsim11G0124300 Rhododendron simsii
Sabra01G0168900 Salix brachista
SalBow3G3816 Salvia bowleyana
Sc07g0004570 Simmondsia chinensis
Sed0019914 Sechium edule
SEGI_07809 Sequoiadendron giganteum
SEGI_10393 Sequoiadendron giganteum
SEGI_11230 Sequoiadendron giganteum
SGA_v2.0_scaffold42G15910 Striga asiatica
SGA_v2.0_scaffold8G04435 Striga asiatica
SHI34757 Sapria himalayana
SMO356G0110 Selaginella moellendorffii
Solyc01g103680.3 Solanum lycopersicum
Sopen01g046090 Solanum pennellii
Sp6g11590 Schrenkiella parvula
Sp7g22330 Schrenkiella parvula
TAR381G0375 Trochodendron aralioides
THA.LOC104799820 Tarenaya hassleriana
THA.LOC104800040 Tarenaya hassleriana
Thecc.02G021100 Theobroma cacao
Thecc.02G021600 Theobroma cacao
Thecc.02G021900 Theobroma cacao
Thecc.02G024000 Theobroma cacao
Thhalv10013427m.g Eutrema salsugineum
Thhalv10024818m.g Eutrema salsugineum
TPR.G2147 Trifolium pratense
TWI14G0879 Tripterygium wilfordii
TWI23G0121 Tripterygium wilfordii
unitig_26.g9028 Utricularia gibba
vmacro01723 Vaccinium macrocarpon
vmacro19868 Vaccinium macrocarpon
VMungo0540G0371 Vigna mungo
Zm00001eb289240 Zea mays
Zm00001eb348650 Zea mays

User provided reference genes

Program Settings