Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p34290 Brassica napus
A01p34300 Brassica napus
A03p41760 Brassica napus
A05p28510 Brassica napus
Aa31LG8G7200 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis
Ah.06g186000 Amaranthus hybridus
AL3G34100 Arabidopsis lyrata
Aqoxy1G03502 Aquilegia oxysepala
Aqoxy4G02047 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea
AT3G20390 Arabidopsis thaliana
ATR0776G085 Amborella trichopoda
ATR0794G030 Amborella trichopoda
ATR0794G138 Amborella trichopoda
Atru.chr2.3409 Acer truncatum
AUR62006502 Chenopodium quinoa
AUR62015777 Chenopodium quinoa
AUR62016539 Chenopodium quinoa
AUR62020441 Chenopodium quinoa
AUR62025768 Chenopodium quinoa
BcaB04g19109 Brassica carinata
BcaB04g20655 Brassica carinata
BcaB06g26102 Brassica carinata
BcaB06g26104 Brassica carinata
BcaC01g01693 Brassica carinata
BcaC01g03554 Brassica carinata
BcaC01g03555 Brassica carinata
BcaC05g26491 Brassica carinata
BcaC05g28323 Brassica carinata
BcaC09g48993 Brassica carinata
BolC1t04330H Brassica oleracea
BolC1t04332H Brassica oleracea
BolC5t33114H Brassica oleracea
BolC6t38526H Brassica oleracea
BolC6t39957H Brassica oleracea
BraA01t03527Z Brassica rapa
BraA01t03528Z Brassica rapa
BraA03t13329Z Brassica rapa
C01p43720 Brassica napus
C01p43730 Brassica napus
C03p51140 Brassica napus
C05p25410 Brassica napus
C05p43960 Brassica napus
CAN.G1781.2 Capsicum annuum
CANSAT01G2526 Cannabis sativa
CARHR096100 Cardamine hirsuta
Carub.0003s2033 Capsella rubella
Ca_01713_v3 Cicer arietinum L.
CBR_g32332 Chara braunii
CBR_g34325 Chara braunii
CBR_g3731 Chara braunii
Cc05_g13680 Coffea canephora
Cfa020343 Carpinus fangiana
Cfa023258 Carpinus fangiana
Ciclev10009443m.g Citrus clementina
CiPaw.11G189400 Carya illinoinensis
CiPaw.12G129800 Carya illinoinensis
ClCG10G005350 Citrullus lanatus
ClCG10G005360 Citrullus lanatus
COL.COLO4_09663 Corchorus olitorius
Cre16.g669650 Chlamydomonas reinhardtii
CsaV3_3G005070 Cucumis sativus L.
CsaV3_3G005080 Cucumis sativus L.
CSS0021043 Camellia sinensis var. sinensis
CSS0032620 Camellia sinensis var. sinensis
DCAR_016705 Daucus carota
Dinv40754 Davidia involucrata
Duzib093G1470 Durio zibethinus
Duzib093G1533 Durio zibethinus
Duzib093G2089 Durio zibethinus
Duzib213G0954 Durio zibethinus
ECA240G3908 Erigeron canadensis
ECA246G4209 Erigeron canadensis
EL10Ac4g07805 Beta vulgaris
Eucgr.F00763 Eucalyptus grandis
Eucgr.L03176 Eucalyptus grandis
FAN11G2833 Fragaria x ananassa
FAN16G0616 Fragaria x ananassa
FAN16G0676 Fragaria x ananassa
FAN21G1759 Fragaria x ananassa
FAN25G1034 Fragaria x ananassa
FvH4_3g22680 Fragaria vesca
Glyma.02G291100 Glycine max
Glyma.08G316200 Glycine max
Glyma.14G023600 Glycine max
Glyma.18G096900 Glycine max
Gohir.A13G138100 Gossypium hirsutum
Gohir.D01G066600 Gossypium hirsutum
Gohir.D13G142900 Gossypium hirsutum
Gorai.002G088600 Gossypium raimondii
Gorai.013G159800 Gossypium raimondii
GSVIVG01037650001 Vitis vinifera
HanXRQChr03g0076521 Helianthus annuus
HanXRQChr05g0159361 Helianthus annuus
Haze_09691 Corylus avellana
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla
HPP92_004132 Vanilla planifolia
Hund01991 Selenicereus undatus
Lalb_Chr15g0081161 Lupinus albus
Lalb_Chr17g0348491 Lupinus albus
Lalb_Chr20g0113861 Lupinus albus
Lj1A872G53 Lonicera japonica
Lj6g0025956 Lotus japonicus
Lj8C169T22 Lonicera japonica
LjContig00272g0007438 Lotus japonicus
Lsat_1_v5_gn_5_3940 Lactuca sativa
Lsat_1_v5_gn_9_93900 Lactuca sativa
Manes.15G071800 Manihot esculenta
Mapoly0108s0009 Marchantia polymorpha
MBI18_g14473_MAGBIO Magnolia biondii
MCO11G845 Micromonas commoda
MD03G1200800 Malus domestica
MD11G1217800 Malus domestica
MD11G1218500 Malus domestica
Medtr3g051740 Medicago truncatula
Medtr5g092740 Medicago truncatula
MELO3C025369.2 Cucumis melo
MELO3C031909.2 Cucumis melo
Migut.H01827 Erythranthe guttata
MSTRG.14435 Avicennia marina
Nitab4.5_0001393g0140 Nicotiana tabacum
Nitab4.5_0004829g0030 Nicotiana tabacum
Nn1g03531 Nelumbo nucifera
Oeu005531.1 Olea europaea
Oeu007580.1 Olea europaea
Oeu021198.1 Olea europaea
Oeu042771.1 Olea europaea
Os07g0516200 Oryza sativa ssp. japonica
Peaxi162Scf00834g00044 Petunia axillaris
PGR083G1099 Punica granatum
PGSC0003DMG400014388 Solanum tuberosum
PGSC0003DMG400022217 Solanum tuberosum
Phvul.006G043400 Phaseolus vulgaris
Phvul.008G266800 Phaseolus vulgaris
Potri.001G435700 Populus trichocarpa
Potri.011G139600 Populus trichocarpa
Pp3c13_21770 Physcomitrium patens
Pp3s32_520 Physcomitrium patens
PRCOL_00004025 Prasinoderma coloniale
Prupe.4G213500 Prunus persica
Psat2g010880 Pisum sativum
Psat5g178840 Pisum sativum
PSO210G5830 Papaver somniferum
PSO832G0061 Papaver somniferum
QL08p010140 Quercus lobata
QL08p010146 Quercus lobata
RcHm_v2.0_Chr5g0039481 Rosa chinensis
RcHm_v2.0_Chr5g0039491 Rosa chinensis
RhsimUnG0250500 Rhododendron simsii
Sabra11G0125600 Salix brachista
Sabra16G0289800 Salix brachista
Sc16g0006040 Simmondsia chinensis
Sed0004226 Sechium edule
Sed0017343 Sechium edule
Sed0024585 Sechium edule
SGA_v2.0_scaffold31G12886 Striga asiatica
SGA_v2.0_scaffold698G53480 Striga asiatica
SGA_v2.0_scaffold8G04319 Striga asiatica
SMO144G0016 Selaginella moellendorffii
Solyc07g064600.3 Solanum lycopersicum
Solyc10g006290.3 Solanum lycopersicum
Sopen07g032790 Solanum pennellii
Sopen10g002240 Solanum pennellii
Sp3g18400 Schrenkiella parvula
TAR626G1684 Trochodendron aralioides
THA.LOC104816925 Tarenaya hassleriana
Thecc.07G036800 Theobroma cacao
Thhalv10021595m.g Eutrema salsugineum
TPR.G1217 Trifolium pratense
TWI39G1026 Tripterygium wilfordii
unitig_8.g3276 Utricularia gibba
vmacro09714 Vaccinium macrocarpon
VMungo0540G1915 Vigna mungo
VMungo0647G2080 Vigna mungo
Zm00001eb322650 Zea mays

User provided reference genes

Program Settings