Gene: AT3G20390

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G20390
  • Transcript Identifier AT3G20390.2
  • Gene Type Coding gene
  • Location Chr3 : 7110227-7111899 : negative

Gene Family Information

  • ID HOM05D003917
  • #Genes/#Species 178/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G20390.2
  • Alias RidA,Reactive Intermediate Deaminase A
  • uniprot Q94JQ4

Descriptions

  • Description endoribonuclease L-PSP family protein
  • Computational description endoribonuclease L-PSP family protein; FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: response to cadmium ion; LOCATED IN: thylakoid, mitochondrion, chloroplast, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease L-PSP (InterPro:IPR006175), YjgF-like protein, conserved site (InterPro:IPR019897), Endoribonuclease L-PSP/chorismate mutase-like (InterPro:IPR013813), YjgF-like protein (InterPro:IPR006056); Has 9982 Blast hits to 9763 proteins in 2269 species: Archae - 153; Bacteria - 7551; Metazoa - 243; Fungi - 414; Plants - 68; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0008652
IEA
GOA Databasecellular amino acid biosynthetic process
GO:0009082
IEA
GOA Databasebranched-chain amino acid biosynthetic process
GO:0009082
IMP
Gene Ontologybranched-chain amino acid biosynthetic process1
GO:0009097
IEA
GOA Databaseisoleucine biosynthetic process
GO:0009636
IEA
GOA Databaseresponse to toxic substance
GO:1901565
IBA
Gene Ontologyorganonitrogen compound catabolic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0120242
IEA
GOA Database2-iminobutanoate deaminase activity
GO:0120243
IEA
GOA Database2-iminopropanoate deaminase activity
GO:0120241
IEA
GOA Database2-iminobutanoate/2-iminopropanoate deaminase
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0019239
IDA
IBA
Gene Ontologydeaminase activity1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009579
IDA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid3
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast1 4
GO:0005773
IDA
GOA Databasevacuole
GO:0009536
IDA
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid5
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma6
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope6
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
IBA
Gene Ontologymitochondrion2
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
HDA
IBA
Gene Ontologycytosol2 7
GO:0000325
HDA
Gene Ontologyplant-type vacuole8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006175 YjgF/YER057c/UK114 family
IPR035959 RutC-like superfamily
IPR006056 RidA family
Mapman id Description
4.1.2.2.8.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.threonine reactive imine intermediate deaminase (RidA)