Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p40350 Brassica napus
A03p38080 Brassica napus
A05p36370 Brassica napus
Aa31LG8G410 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis
Actinidia10568 Actinidia chinensis
Actinidia30379 Actinidia chinensis
Ah.06g181560 Amaranthus hybridus
Ah.13g073470 Amaranthus hybridus
AL3G24950 Arabidopsis lyrata
Aqoxy3G02916 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea
AT3G13200 Arabidopsis thaliana
ATR0733G138 Amborella trichopoda
ATR0733G199 Amborella trichopoda
ATR1153G045 Amborella trichopoda
Atru.chr2.3832 Acer truncatum
AUR62017134 Chenopodium quinoa
AUR62035674 Chenopodium quinoa
BcaB04g18746 Brassica carinata
BcaB04g21002 Brassica carinata
BcaB06g25479 Brassica carinata
BcaC01g04006 Brassica carinata
BcaC05g29203 Brassica carinata
BolC1t05136H Brassica oleracea
BolC3t16892H Brassica oleracea
BolC5t34149H Brassica oleracea
BraA01t04070Z Brassica rapa
BraA03t12961Z Brassica rapa
BraA05t22437Z Brassica rapa
C01p51880 Brassica napus
C03p46210 Brassica napus
C05p54720 Brassica napus
C05p54750 Brassica napus
CAN.G492.53 Capsicum annuum
CANSAT56G2895 Cannabis sativa
CARHR087790 Cardamine hirsuta
Carub.0003s1256 Capsella rubella
Ca_21964_v3 Cicer arietinum L.
CBR_g58788 Chara braunii
Cc05_g15250 Coffea canephora
Cfa016929 Carpinus fangiana
Ciclev10009386m.g Citrus clementina
CiPaw.12G140300 Carya illinoinensis
ClCG10G004480 Citrullus lanatus
COL.COLO4_07729 Corchorus olitorius
COL.COLO4_09698 Corchorus olitorius
Cre24.g755447 Chlamydomonas reinhardtii
CsaV3_3G004310 Cucumis sativus L.
CSS0001317 Camellia sinensis var. sinensis
CSS0008032 Camellia sinensis var. sinensis
CSS0014433 Camellia sinensis var. sinensis
CSS0021051 Camellia sinensis var. sinensis
CSS0032461 Camellia sinensis var. sinensis
CSS0035354 Camellia sinensis var. sinensis
CSS0038981 Camellia sinensis var. sinensis
DCAR_003369 Daucus carota
DCAR_019010 Daucus carota
Dinv40883 Davidia involucrata
Duzib170G0277 Durio zibethinus
Duzib213G0370 Durio zibethinus
ECA246G5298 Erigeron canadensis
EL10Ac4g07536 Beta vulgaris
Eucgr.F02030 Eucalyptus grandis
FAN02G3468 Fragaria x ananassa
FAN05G2176 Fragaria x ananassa
FAN09G2902 Fragaria x ananassa
FAN14G0574 Fragaria x ananassa
FAN14G2004 Fragaria x ananassa
FvH4_6g22570 Fragaria vesca
Glyma.05G059200 Glycine max
Glyma.17G141500 Glycine max
Gohir.A13G131100 Gossypium hirsutum
Gohir.D13G134400 Gossypium hirsutum
Gorai.013G150700 Gossypium raimondii
GSVIVG01014735001 Vitis vinifera
HanXRQChr05g0160321 Helianthus annuus
HanXRQChr08g0233271 Helianthus annuus
Haze_09860 Corylus avellana
Haze_27574 Corylus avellana
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla
HPP92_015188 Vanilla planifolia
Hund01874 Selenicereus undatus
Hund01875 Selenicereus undatus
Lalb_Chr05g0221281 Lupinus albus
Lalb_Chr16g0386671 Lupinus albus
Lj1C893G21 Lonicera japonica
Lj1g0011673 Lotus japonicus
Lj4g0022976 Lotus japonicus
Lsat_1_v5_gn_4_109061 Lactuca sativa
Lsat_1_v5_gn_5_188801 Lactuca sativa
Lsat_1_v5_gn_5_2000 Lactuca sativa
Lsat_1_v5_gn_8_106160 Lactuca sativa
Manes.03G143400 Manihot esculenta
Mapoly0072s0064 Marchantia polymorpha
MBI11_g04749_MAGBIO Magnolia biondii
MBI19_g41323_MAGBIO Magnolia biondii
MCO14G027 Micromonas commoda
MCO14G028 Micromonas commoda
MD03G1032500 Malus domestica
MD11G1036400 Malus domestica
Medtr4g100970 Medicago truncatula
MELO3C014122.2 Cucumis melo
Migut.M01631 Erythranthe guttata
MSTRG.13030 Avicennia marina
MSTRG.14500 Avicennia marina
Nitab4.5_0000152g0340 Nicotiana tabacum
Nitab4.5_0003328g0110 Nicotiana tabacum
Nitab4.5_0005478g0040 Nicotiana tabacum
Nitab4.5_0010643g0040 Nicotiana tabacum
Nn1g07559 Nelumbo nucifera
Nn1g07757 Nelumbo nucifera
Oeu039420.1 Olea europaea
Os06g0106100 Oryza sativa ssp. japonica
Peaxi162Scf00139g01026 Petunia axillaris
PGR083G1050 Punica granatum
PGSC0003DMG400008684 Solanum tuberosum
PGSC0003DMG400022160 Solanum tuberosum
Phvul.003G220300 Phaseolus vulgaris
Phvul.008G217400 Phaseolus vulgaris
Potri.001G370366 Populus trichocarpa
Pp3c5_15120 Physcomitrium patens
PRCOL_00003569 Prasinoderma coloniale
Prupe.6G027200 Prunus persica
Psat0s1834g0040 Pisum sativum
PSO210G1946 Papaver somniferum
PSO210G5551 Papaver somniferum
PSO384G2596 Papaver somniferum
QL08p003216 Quercus lobata
RcHm_v2.0_Chr1g0318721 Rosa chinensis
RcHm_v2.0_Chr3g0468911 Rosa chinensis
RcHm_v2.0_Chr3g0480061 Rosa chinensis
Rhsim06G0232400 Rhododendron simsii
Sabra16G0243800 Salix brachista
SalBow1G3668 Salvia bowleyana
SalBow2G0143 Salvia bowleyana
SalBow2G0786 Salvia bowleyana
SalBow2G1425 Salvia bowleyana
SalBow2G2704 Salvia bowleyana
SalBow2G2880 Salvia bowleyana
SalBow2G3065 Salvia bowleyana
SalBow2G3218 Salvia bowleyana
SalBow8G3434 Salvia bowleyana
SalBow8G5188 Salvia bowleyana
Sc03g0011570 Simmondsia chinensis
Sed0004751 Sechium edule
Sed0017804 Sechium edule
SGA_v2.0_scaffold8G04417 Striga asiatica
SHI27704 Sapria himalayana
SMO356G0623 Selaginella moellendorffii
Solyc07g065800.3 Solanum lycopersicum
Solyc10g005800.3 Solanum lycopersicum
Sopen07g033990 Solanum pennellii
Sopen10g001770 Solanum pennellii
Sp3g11380 Schrenkiella parvula
TAR627G0008 Trochodendron aralioides
TAR629G2602 Trochodendron aralioides
THA.LOC104810295 Tarenaya hassleriana
THA.LOC104815689 Tarenaya hassleriana
THA.LOC104822723 Tarenaya hassleriana
Thecc.07G008300 Theobroma cacao
Thhalv10021450m.g Eutrema salsugineum
TPR.G2621 Trifolium pratense
TPR.G37597 Trifolium pratense
TPR.G37600 Trifolium pratense
TWI38G2335 Tripterygium wilfordii
TWI39G1241 Tripterygium wilfordii
unitig_0.g990 Utricularia gibba
unitig_61.g26133 Utricularia gibba
unitig_61.g26134 Utricularia gibba
vmacro11612 Vaccinium macrocarpon
VMungo0251G1810 Vigna mungo
Zm00001eb119790 Zea mays
Zm00001eb157240 Zea mays
Zm00001eb225910 Zea mays
Zm00001eb338740 Zea mays

User provided reference genes

Program Settings