Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p27910 Brassica napus
A08p26240 Brassica napus
A09p38510 Brassica napus
Aa31LG7G10210 Aethionema arabicum
Aa31sc622G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.858 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis
Actinidia10210 Actinidia chinensis
Actinidia19301 Actinidia chinensis
Actinidia19302 Actinidia chinensis
Ah.05g167030 Amaranthus hybridus
AL1G40900 Arabidopsis lyrata
AL6G41310 Arabidopsis lyrata
Aqoxy3G00456 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea
AT1G27470 Arabidopsis thaliana
AT4G07410 Arabidopsis thaliana
ATR0739G177 Amborella trichopoda
Atru.chr13.849 Acer truncatum
AUR62022465 Chenopodium quinoa
AUR62043254 Chenopodium quinoa
BcaB01g02881 Brassica carinata
BcaC01g01603 Brassica carinata
BcaC01g04785 Brassica carinata
BcaC01g06947 Brassica carinata
BcaC05g26567 Brassica carinata
BcaC05g26751 Brassica carinata
BolC3t15689H Brassica oleracea
BolC3t19677H Brassica oleracea
BolC5t31333H Brassica oleracea
BraA03t12004Z Brassica rapa
BraA08t34575Z Brassica rapa
BraA09t39357Z Brassica rapa
C03p33700 Brassica napus
C03p74200 Brassica napus
C05p26190 Brassica napus
CANSAT25G0987 Cannabis sativa
CARHR027080 Cardamine hirsuta
CARHR287080 Cardamine hirsuta
Carub.0001s2603 Capsella rubella
Carub.0006s2652 Capsella rubella
Ca_13209_v3 Cicer arietinum L.
Ca_23258_v3 Cicer arietinum L.
CBR_g57871 Chara braunii
Cc10_g05060 Coffea canephora
CDE04G2329 Ceratophyllum demersum
CDE04G2756 Ceratophyllum demersum
CDE07G0463 Ceratophyllum demersum
Cfa013762 Carpinus fangiana
Cfa027112 Carpinus fangiana
Ciclev10000301m.g Citrus clementina
CiPaw.07G173600 Carya illinoinensis
CiPaw.08G050900 Carya illinoinensis
ClCG05G020690 Citrullus lanatus
COL.COLO4_29256 Corchorus olitorius
Cpa.g.sc142.42 Carica papaya
Cre13.g606850 Chlamydomonas reinhardtii
CsaV3_4G035140 Cucumis sativus L.
CSS0002287 Camellia sinensis var. sinensis
CSS0003704 Camellia sinensis var. sinensis
CSS0010741 Camellia sinensis var. sinensis
CSS0021932 Camellia sinensis var. sinensis
CSS0041779 Camellia sinensis var. sinensis
CSS0044410 Camellia sinensis var. sinensis
CSS0046104 Camellia sinensis var. sinensis
CSS0047227 Camellia sinensis var. sinensis
DCAR_004814 Daucus carota
DCAR_009874 Daucus carota
DCAR_012822 Daucus carota
DCAR_032226 Daucus carota
DCAR_032227 Daucus carota
Dinv39213 Davidia involucrata
Dinv39214 Davidia involucrata
Dinv44943 Davidia involucrata
Duzib151G0173 Durio zibethinus
ECA247G0551 Erigeron canadensis
EL10Ac1g02364 Beta vulgaris
Eucgr.F02239 Eucalyptus grandis
FAN15G1506 Fragaria x ananassa
FAN20G3047 Fragaria x ananassa
FAN24G1723 Fragaria x ananassa
FAN27G2988 Fragaria x ananassa
FvH4_2g32880 Fragaria vesca
Glyma.14G089042 Glycine max
Glyma.17G233900 Glycine max
Gohir.A02G089200 Gossypium hirsutum
Gohir.A10G151900 Gossypium hirsutum
Gohir.D02G112100 Gossypium hirsutum
Gohir.D10G114400 Gossypium hirsutum
Gorai.005G127000 Gossypium raimondii
Gorai.011G126100 Gossypium raimondii
GSVIVG01009321001 Vitis vinifera
HanXRQChr10g0292141 Helianthus annuus
HanXRQChr10g0292161 Helianthus annuus
HanXRQChr14g0443971 Helianthus annuus
HanXRQChr15g0495401 Helianthus annuus
Haze_22418 Corylus avellana
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla
HPP92_003353 Vanilla planifolia
Hund05292 Selenicereus undatus
Lalb_Chr14g0368121 Lupinus albus
Lalb_Chr22g0355711 Lupinus albus
Lj4A757T32 Lonicera japonica
Lj4C72T17 Lonicera japonica
Lj4P754T16 Lonicera japonica
Lj5g0007294 Lotus japonicus
Lsat_1_v5_gn_0_45940 Lactuca sativa
Lsat_1_v5_gn_1_1120 Lactuca sativa
Lsat_1_v5_gn_1_440 Lactuca sativa
Manes.02G183600 Manihot esculenta
Manes.18G095200 Manihot esculenta
Mapoly0027s0127 Marchantia polymorpha
MCO10G249 Micromonas commoda
MD08G1080300 Malus domestica
MD15G1067400 Malus domestica
Medtr1g017880 Medicago truncatula
Medtr8g014080 Medicago truncatula
MELO3C016827.2 Cucumis melo
Migut.N02791 Erythranthe guttata
MSTRG.24381 Avicennia marina
Nitab4.5_0000497g0070 Nicotiana tabacum
Nitab4.5_0002314g0030 Nicotiana tabacum
Nitab4.5_0003725g0010 Nicotiana tabacum
Nitab4.5_0009040g0020 Nicotiana tabacum
Oeu014279.1 Olea europaea
Oeu036976.1 Olea europaea
Oeu053086.3 Olea europaea
Os03g0735100 Oryza sativa ssp. japonica
Peaxi162Scf00081g02729 Petunia axillaris
Peaxi162Scf00160g00521 Petunia axillaris
PGR031G2627 Punica granatum
PGSC0003DMG400011543 Solanum tuberosum
PGSC0003DMG401010623 Solanum tuberosum
Phvul.001G028900 Phaseolus vulgaris
Potri.002G117500 Populus trichocarpa
Potri.014G014900 Populus trichocarpa
Pp3c18_6690 Physcomitrium patens
Pp3c19_13580 Physcomitrium patens
Pp3c22_14490 Physcomitrium patens
PRCOL_00004412 Prasinoderma coloniale
Prupe.1G421300 Prunus persica
Psat6g017680 Pisum sativum
Psat7g031120 Pisum sativum
PSO017G5808 Papaver somniferum
PSO541G5768 Papaver somniferum
QL12p038269 Quercus lobata
QL93p0154_0009 Quercus lobata
RcHm_v2.0_Chr6g0309831 Rosa chinensis
Sabra02G0092000 Salix brachista
Sabra14G0008900 Salix brachista
SalBow2G1921 Salvia bowleyana
Sc02g0007980 Simmondsia chinensis
Sed0011873 Sechium edule
Sed0028163 Sechium edule
SEGI_10786 Sequoiadendron giganteum
SEGI_24646 Sequoiadendron giganteum
SGA_v2.0_scaffold152G36813 Striga asiatica
SGA_v2.0_scaffold28G11839 Striga asiatica
SMO367G0860 Selaginella moellendorffii
Solyc04g077680.3 Solanum lycopersicum
Solyc12g088290.2 Solanum lycopersicum
Sopen04g031320 Solanum pennellii
Sopen12g030290 Solanum pennellii
Sp1g23720 Schrenkiella parvula
Sp6g10450 Schrenkiella parvula
TAR376G0365 Trochodendron aralioides
TAR376G0468 Trochodendron aralioides
TAR376G0760 Trochodendron aralioides
TAR628G0363 Trochodendron aralioides
THA.LOC104824968 Tarenaya hassleriana
THA.LOC104825785 Tarenaya hassleriana
Thecc.04G063000 Theobroma cacao
Thhalv10006817m.g Eutrema salsugineum
Thhalv10028433m.g Eutrema salsugineum
TPR.G12983 Trifolium pratense
TPR.G32238 Trifolium pratense
TWI12G0955 Tripterygium wilfordii
TWI56G1015 Tripterygium wilfordii
unitig_0.g1045 Utricularia gibba
vmacro16900 Vaccinium macrocarpon
VMungo0647G0070 Vigna mungo
Zm00001eb056350 Zea mays
Zm00001eb215430 Zea mays
Zm00001eb280470 Zea mays

User provided reference genes

Program Settings