Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Aa31LG11G13430 Aethionema arabicum
Aa31LG5G13090 Aethionema arabicum
Aa31LG9G17600 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3284 Anthoceros agrestis
Actinidia04714 Actinidia chinensis
Actinidia15894 Actinidia chinensis
Actinidia17640 Actinidia chinensis
Actinidia36333 Actinidia chinensis
Ah.13g071090 Amaranthus hybridus
Ah.13g071100 Amaranthus hybridus
AL3G11950 Arabidopsis lyrata
AL3G11970 Arabidopsis lyrata
AL7G46390 Arabidopsis lyrata
Aqoxy3G00229 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1LLR2Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2U7JMY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D2V5IT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F3C1SQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y29W5P Arachis hypogaea
AT3G02580 Arabidopsis thaliana
AT3G02590 Arabidopsis thaliana
ATR1125G047 Amborella trichopoda
Atru.chr1.1648 Acer truncatum
AUR62009016 Chenopodium quinoa
BcaB04g19396 Brassica carinata
BcaB04g19397 Brassica carinata
BcaB04g19398 Brassica carinata
BcaC01g04435 Brassica carinata
BcaC01g04436 Brassica carinata
BcaC01g04561 Brassica carinata
BcaC01g04562 Brassica carinata
BcaC05g30365 Brassica carinata
BcaC09g47712 Brassica carinata
BcaC09g47713 Brassica carinata
BcaC09g47714 Brassica carinata
BcaNung05403 Brassica carinata
BNapus_Darmor_BZH_scaffold_122p00080 Brassica napus
BNapus_Darmor_BZH_scaffold_122p00090 Brassica napus
BNapus_Darmor_BZH_scaffold_99p00100 Brassica napus
BNapus_Darmor_BZH_scaffold_99p00110 Brassica napus
BolC1t05891H Brassica oleracea
BolC1t05892H Brassica oleracea
BolC3t16283H Brassica oleracea
BolC3t16284H Brassica oleracea
BolC3t16285H Brassica oleracea
BolC3t16286H Brassica oleracea
BolC5t35077H Brassica oleracea
BraA03t12471Z Brassica rapa
BraA03t12472Z Brassica rapa
BraA03t12473Z Brassica rapa
BraA05t23136Z Brassica rapa
BraSC246t45831Z Brassica rapa
BraSC246t45832Z Brassica rapa
C03p40190 Brassica napus
C03p40200 Brassica napus
C03p40210 Brassica napus
CAN.G1206.5 Capsicum annuum
CAN.G625.34 Capsicum annuum
CANSAT78G0370 Cannabis sativa
CARHR076590 Cardamine hirsuta
CARHR076600 Cardamine hirsuta
CARHR076610 Cardamine hirsuta
CARHR215250 Cardamine hirsuta
Carub.0003s0170 Capsella rubella
Carub.0003s0171 Capsella rubella
Ca_04373_v3 Cicer arietinum L.
CBR_g17142 Chara braunii
Cc00_g15970 Coffea canephora
Cc00_g22670 Coffea canephora
Cc07_g08680 Coffea canephora
CDE02G0324 Ceratophyllum demersum
CDE02G4085 Ceratophyllum demersum
CDE08G1617 Ceratophyllum demersum
Ciclev10012450m.g Citrus clementina
CiPaw.03G063200 Carya illinoinensis
CiPaw.04G043400 Carya illinoinensis
ClCG07G014740 Citrullus lanatus
COL.COLO4_09354 Corchorus olitorius
Cpa.g.sc170.51 Carica papaya
Cre16.g663950 Chlamydomonas reinhardtii
CsaV3_4G028790 Cucumis sativus L.
CSS0002653 Camellia sinensis var. sinensis
CSS0014584 Camellia sinensis var. sinensis
CSS0021107 Camellia sinensis var. sinensis
DCAR_017183 Daucus carota
DCAR_025906 Daucus carota
Dinv33957 Davidia involucrata
Dinv34809 Davidia involucrata
Duzib138G0282 Durio zibethinus
Duzib138G1410 Durio zibethinus
Duzib138G1418 Durio zibethinus
ECA233G5208 Erigeron canadensis
ECA246G0238 Erigeron canadensis
ECA246G2414 Erigeron canadensis
ECA246G2611 Erigeron canadensis
EL10Ac2g04550 Beta vulgaris
EL10Ac3g05124 Beta vulgaris
EL10Ac3g05125 Beta vulgaris
Eucgr.J01509 Eucalyptus grandis
FAN15G0565 Fragaria x ananassa
FAN20G2545 Fragaria x ananassa
FAN24G0192 Fragaria x ananassa
FvH4_2g26170 Fragaria vesca
Glyma.13G044800 Glycine max
Glyma.19G050500 Glycine max
Gohir.A07G072300 Gossypium hirsutum
Gohir.D07G076500 Gossypium hirsutum
Gorai.001G081200 Gossypium raimondii
GSVIVG01011855001 Vitis vinifera
GSVIVG01011856001 Vitis vinifera
GSVIVG01031002001 Vitis vinifera
HanXRQChr07g0194571 Helianthus annuus
HanXRQChr14g0438511 Helianthus annuus
Haze_14172 Corylus avellana
Hma1.2p1_1109F.1_g258150 Hydrangea macrophylla
HPP92_021872 Vanilla planifolia
Hund13490 Selenicereus undatus
Hund13707 Selenicereus undatus
Hund16169 Selenicereus undatus
Lalb_Chr06g0174501 Lupinus albus
Lj2A440G34 Lonicera japonica
Lj2g0005054 Lotus japonicus
Lsat_1_v5_gn_2_79380 Lactuca sativa
Lsat_1_v5_gn_3_80500 Lactuca sativa
Manes.01G111800 Manihot esculenta
Manes.02G070100 Manihot esculenta
Mapoly0087s0033 Marchantia polymorpha
MBI09_g03807_MAGBIO Magnolia biondii
MBI16_g39633_MAGBIO Magnolia biondii
MBI16_g42520_MAGBIO Magnolia biondii
MCO01G252 Micromonas commoda
MD09G1254800 Malus domestica
MD17G1247400 Malus domestica
Medtr6g018820 Medicago truncatula
Medtr6g018860 Medicago truncatula
Medtr6g018900 Medicago truncatula
MELO3C010409.2 Cucumis melo
Migut.H00228 Erythranthe guttata
Migut.H00229 Erythranthe guttata
MSTRG.23582 Avicennia marina
Nitab4.5_0000912g0040 Nicotiana tabacum
Nitab4.5_0000965g0110 Nicotiana tabacum
Nitab4.5_0004279g0010 Nicotiana tabacum
Nitab4.5_0007990g0090 Nicotiana tabacum
Nn3g17912 Nelumbo nucifera
Nn4g23916 Nelumbo nucifera
Oeu016630.2 Olea europaea
Oeu050380.1 Olea europaea
Os01g0134500 Oryza sativa ssp. japonica
Peaxi162Scf00394g00814 Petunia axillaris
Peaxi162Scf00394g00820 Petunia axillaris
Peaxi162Scf01205g00193 Petunia axillaris
Peaxi162Scf01445g00127 Petunia axillaris
PGR042G2240 Punica granatum
PGSC0003DMG400010415 Solanum tuberosum
PGSC0003DMG400026401 Solanum tuberosum
PGSC0003DMG402026400 Solanum tuberosum
Phvul.004G067300 Phaseolus vulgaris
Potri.004G097500 Populus trichocarpa
Potri.017G116600 Populus trichocarpa
Pp3c11_20130 Physcomitrium patens
Pp3c7_7860 Physcomitrium patens
PRCOL_00002071 Prasinoderma coloniale
PRCOL_00003571 Prasinoderma coloniale
Prupe.3G144900 Prunus persica
Psat1g082040 Pisum sativum
PSO017G5538 Papaver somniferum
PSO478G3997 Papaver somniferum
QL02p050872 Quercus lobata
QL02p050879 Quercus lobata
QL12p016389 Quercus lobata
QL12p016398 Quercus lobata
RcHm_v2.0_Chr6g0294591 Rosa chinensis
Rhsim08G0083000 Rhododendron simsii
Rhsim08G0083200 Rhododendron simsii
Rhsim09G0050000 Rhododendron simsii
Rhsim10G0068800 Rhododendron simsii
Rhsim10G0069200 Rhododendron simsii
Sabra04G0081800 Salix brachista
Sabra17G0096500 Salix brachista
SalBow3G2708 Salvia bowleyana
Sc11g0008420 Simmondsia chinensis
Sed0008452 Sechium edule
Sed0018805 Sechium edule
SGA_v2.0_scaffold49G18112 Striga asiatica
SMO117G0252 Selaginella moellendorffii
Solyc02g063240.4 Solanum lycopersicum
Solyc02g086180.4 Solanum lycopersicum
Solyc02g086190.3 Solanum lycopersicum
Sopen02g014310 Solanum pennellii
Sopen02g030870 Solanum pennellii
Sp3g01620 Schrenkiella parvula
Sp3g01630 Schrenkiella parvula
TAR622G0921 Trochodendron aralioides
TAR622G1011 Trochodendron aralioides
TAR629G1968 Trochodendron aralioides
THA.LOC104820939 Tarenaya hassleriana
THA.LOC104822096 Tarenaya hassleriana
THA.LOC104827161 Tarenaya hassleriana
THA.LOC104827162 Tarenaya hassleriana
Thecc.04G131200 Theobroma cacao
Thhalv10011706m.g Eutrema salsugineum
Thhalv10021274m.g Eutrema salsugineum
Thhalv10021293m.g Eutrema salsugineum
TPR.G32444 Trifolium pratense
TWI74G1350 Tripterygium wilfordii
TWI77G0825 Tripterygium wilfordii
unitig_899.g14513 Utricularia gibba
vmacro05536 Vaccinium macrocarpon
vmacro18068 Vaccinium macrocarpon
vmacro18069 Vaccinium macrocarpon
VMungo0464G1850 Vigna mungo
Zm00001eb125130 Zea mays
Zm00001eb335380 Zea mays

User provided reference genes

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