Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p15650 Brassica napus
A07p28940 Brassica napus
A09p43990 Brassica napus
Aa31LG4G18990 Aethionema arabicum
Aa31LG4G5460 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.705 Anthoceros agrestis
Actinidia15334 Actinidia chinensis
Actinidia19190 Actinidia chinensis
Actinidia22537 Actinidia chinensis
Actinidia35633 Actinidia chinensis
Ah.01g015790 Amaranthus hybridus
AL1G32220 Arabidopsis lyrata
AL2G35150 Arabidopsis lyrata
AL5G31230 Arabidopsis lyrata
Aqoxy5G01611 Aquilegia oxysepala
Aqoxy6G01128 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5SV8SS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4MEDX Arachis hypogaea
AT1G19480 Arabidopsis thaliana
AT1G75230 Arabidopsis thaliana
AT3G50880 Arabidopsis thaliana
Atru.chr13.456 Acer truncatum
Atru.chr3.586 Acer truncatum
AUR62022510 Chenopodium quinoa
AUR62042520 Chenopodium quinoa
BcaB01g00570 Brassica carinata
BcaB02g07018 Brassica carinata
BcaC05g25822 Brassica carinata
BcaC07g39554 Brassica carinata
BcaC08g45589 Brassica carinata
BolC5t30495H Brassica oleracea
BolC6t38395H Brassica oleracea
BolC8t50227H Brassica oleracea
BraA06t24674Z Brassica rapa
BraA07t30536Z Brassica rapa
BraA09t39857Z Brassica rapa
C05p17880 Brassica napus
C06p32710 Brassica napus
C08p26090 Brassica napus
CAN.G1226.26 Capsicum annuum
CAN.G173.7 Capsicum annuum
CAN.G358.78 Capsicum annuum
CAN.G53.37 Capsicum annuum
CANSAT01G1037 Cannabis sativa
CANSAT25G0636 Cannabis sativa
CARHR068560 Cardamine hirsuta
CARHR160430 Cardamine hirsuta
Carub.0001s1904 Capsella rubella
Carub.0002s2205 Capsella rubella
Carub.0005s1727 Capsella rubella
Ca_15511_v3 Cicer arietinum L.
Ca_24853_v3 Cicer arietinum L.
Cc07_g09600 Coffea canephora
Cc09_g09100 Coffea canephora
CDE05G1097 Ceratophyllum demersum
CDE11G0722 Ceratophyllum demersum
Cfa001941 Carpinus fangiana
Cfa004315 Carpinus fangiana
Cfa018163 Carpinus fangiana
Ciclev10001539m.g Citrus clementina
Ciclev10026218m.g Citrus clementina
CiPaw.01G040200 Carya illinoinensis
CiPaw.16G059300 Carya illinoinensis
ClCG01G019620 Citrullus lanatus
ClCG05G018920 Citrullus lanatus
COL.COLO4_22066 Corchorus olitorius
COL.COLO4_26300 Corchorus olitorius
Cpa.g.sc3303.1 Carica papaya
Cpa.g.sc6.120 Carica papaya
Cre11.g476400 Chlamydomonas reinhardtii
CsaV3_3G045200 Cucumis sativus L.
CsaV3_6G046270 Cucumis sativus L.
CSS0007692 Camellia sinensis var. sinensis
CSS0025092 Camellia sinensis var. sinensis
CSS0039677 Camellia sinensis var. sinensis
DCAR_017295 Daucus carota
DCAR_017456 Daucus carota
Dinv13523 Davidia involucrata
Dinv36091 Davidia involucrata
Dinv39429 Davidia involucrata
Dinv42057 Davidia involucrata
Duzib041G0049 Durio zibethinus
Duzib093G0083 Durio zibethinus
Duzib116G0594 Durio zibethinus
Duzib187G1963 Durio zibethinus
Duzib264G0244 Durio zibethinus
ECA232G2062 Erigeron canadensis
ECA236G0568 Erigeron canadensis
EL10Ac8g19516 Beta vulgaris
Eucgr.F01572 Eucalyptus grandis
Eucgr.H01279 Eucalyptus grandis
FAN15G0352 Fragaria x ananassa
FAN19G3105 Fragaria x ananassa
FAN20G3186 Fragaria x ananassa
FAN23G2376 Fragaria x ananassa
FAN26G0807 Fragaria x ananassa
FAN27G0912 Fragaria x ananassa
FAN28G0663 Fragaria x ananassa
FAN28G0674 Fragaria x ananassa
FvH4_1g13180 Fragaria vesca
FvH4_1g13192 Fragaria vesca
FvH4_2g39710 Fragaria vesca
Glyma.04G031600 Glycine max
Glyma.06G031700 Glycine max
Gohir.A02G166100 Gossypium hirsutum
Gohir.A05G193400 Gossypium hirsutum
Gohir.A05G259200 Gossypium hirsutum
Gohir.D03G013900 Gossypium hirsutum
Gohir.D05G196600 Gossypium hirsutum
Gohir.D05G261200 Gossypium hirsutum
Gorai.003G014200 Gossypium raimondii
Gorai.009G201500 Gossypium raimondii
Gorai.009G273100 Gossypium raimondii
GSVIVG01009720001 Vitis vinifera
GSVIVG01018948001 Vitis vinifera
GSVIVG01031981001 Vitis vinifera
HanXRQChr09g0261521 Helianthus annuus
HanXRQChr09g0261561 Helianthus annuus
HanXRQChr16g0530561 Helianthus annuus
Haze_15079 Corylus avellana
Haze_17955 Corylus avellana
Hma1.2p1_0203F.1_g086300 Hydrangea macrophylla
HPP92_009674 Vanilla planifolia
HPP92_019948 Vanilla planifolia
Hund26567 Selenicereus undatus
Lalb_Chr08g0245881 Lupinus albus
Lj1g0005875 Lotus japonicus
Lj1P191T22 Lonicera japonica
Lj2g0024691 Lotus japonicus
Lj2P453T31 Lonicera japonica
Lj2P925T11 Lonicera japonica
Lsat_1_v5_gn_3_76620 Lactuca sativa
Lsat_1_v5_gn_4_148860 Lactuca sativa
Manes.02G094000 Manihot esculenta
Manes.05G158700 Manihot esculenta
Manes.18G023800 Manihot esculenta
Mapoly0005s0224 Marchantia polymorpha
MBI07_g10948_MAGBIO Magnolia biondii
MBI14_g15780_MAGBIO Magnolia biondii
MCO11G437 Micromonas commoda
MD02G1146600 Malus domestica
MD08G1030800 Malus domestica
MD15G1026100 Malus domestica
MD15G1026200 Malus domestica
Medtr3g111890 Medicago truncatula
Medtr5g020300 Medicago truncatula
MELO3C003829.2 Cucumis melo
MELO3C007830.2 Cucumis melo
Migut.H00984 Erythranthe guttata
MSTRG.23520 Avicennia marina
Nitab4.5_0000136g0380 Nicotiana tabacum
Nitab4.5_0000136g0390 Nicotiana tabacum
Nitab4.5_0001960g0010 Nicotiana tabacum
Nitab4.5_0002224g0060 Nicotiana tabacum
Nitab4.5_0010698g0010 Nicotiana tabacum
Nn1g04966 Nelumbo nucifera
Nn5g29632 Nelumbo nucifera
Oeu005552.1 Olea europaea
Oeu042404.1 Olea europaea
Os03g0248250 Oryza sativa ssp. japonica
Os05g0567500 Oryza sativa ssp. japonica
Os05g0579100 Oryza sativa ssp. japonica
Peaxi162Scf00366g00029 Petunia axillaris
PGR083G0893 Punica granatum
PGR102G3080 Punica granatum
PGSC0003DMG400015479 Solanum tuberosum
Phvul.009G058200 Phaseolus vulgaris
Potri.002G035300 Populus trichocarpa
Potri.005G227700 Populus trichocarpa
Potri.007G024200 Populus trichocarpa
Pp3c16_1250 Physcomitrium patens
Pp3c6_17700 Physcomitrium patens
PRCOL_00003871 Prasinoderma coloniale
Prupe.1G378400 Prunus persica
Prupe.7G155600 Prunus persica
Psat2g159080 Pisum sativum
Psat5g016960 Pisum sativum
PSO170G4435 Papaver somniferum
PSO541G1078 Papaver somniferum
PSO675G3180 Papaver somniferum
PSO764G0146 Papaver somniferum
QL02p008877 Quercus lobata
QL06p046364 Quercus lobata
RcHm_v2.0_Chr1g0355191 Rosa chinensis
RcHm_v2.0_Chr1g0355201 Rosa chinensis
RcHm_v2.0_Chr2g0101401 Rosa chinensis
RcHm_v2.0_Chr6g0301151 Rosa chinensis
Rhsim01G0069500 Rhododendron simsii
Rhsim06G0032500 Rhododendron simsii
Sabra02G0028300 Salix brachista
Sabra07G0021300 Salix brachista
SalBow1G4979 Salvia bowleyana
Sc15g0006980 Simmondsia chinensis
Sed0008156 Sechium edule
Sed0025948 Sechium edule
SEGI_04103 Sequoiadendron giganteum
SGA_v2.0_scaffold276G46623 Striga asiatica
SGA_v2.0_scaffold54G19541 Striga asiatica
SHI08150 Sapria himalayana
SHI22839 Sapria himalayana
Solyc02g062720.4 Solanum lycopersicum
Solyc04g080470.4 Solanum lycopersicum
Sopen02g013750 Solanum pennellii
Sopen04g034060 Solanum pennellii
Sp1g17350 Schrenkiella parvula
Sp5g11340 Schrenkiella parvula
Sp5g30390 Schrenkiella parvula
TAR381G0688 Trochodendron aralioides
THA.LOC104806339 Tarenaya hassleriana
THA.LOC104821288 Tarenaya hassleriana
Thecc.01G034200 Theobroma cacao
Thecc.08G028000 Theobroma cacao
Thhalv10007939m.g Eutrema salsugineum
Thhalv10010616m.g Eutrema salsugineum
Thhalv10018654m.g Eutrema salsugineum
TPR.G12400 Trifolium pratense
TPR.G40307 Trifolium pratense
TWI12G0554 Tripterygium wilfordii
TWI36G1215 Tripterygium wilfordii
TWI56G1431 Tripterygium wilfordii
TWI73G0430 Tripterygium wilfordii
unitig_899.g14494 Utricularia gibba
VMungo1309G0078 Vigna mungo
Zm00001eb296180 Zea mays
Zm00001eb296790 Zea mays
Zm00001eb344580 Zea mays

User provided reference genes

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