Gene: AT1G19480
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G19480
- Transcript Identifier AT1G19480.1
- Gene Type Coding gene
- Location Chr1 : 6744520-6746144 : positive
Gene Family Information
- ID HOM05D003046
- #Genes/#Species 226/96
- Phylogenetic origin
- ID ORTHO05D003428
- #Genes/#Species 224/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G19480.1
- uniprot Q56YU8
Descriptions
- Description DNA glycosylase superfamily protein
- Computational description DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62; Bacteria - 2357; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006284 | IEA | Gene Ontology | base-excision repair | |
| GO:0006284 | IEA | InterPro | base-excision repair | |
| GO:0006285 | IBA | Gene Ontology | base-excision repair, AP site formation | 1 |
| GO:0006307 | IBA | Gene Ontology | DNA dealkylation involved in DNA repair | 1 |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003824 | IEA | Gene Ontology | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0032131 | IBA | Gene Ontology | alkylated DNA binding | 1 |
| GO:0043916 | IBA | Gene Ontology | DNA-7-methylguanine glycosylase activity | 1 |
| GO:0008725 | IBA | Gene Ontology | DNA-3-methyladenine glycosylase activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 1 |
| GO:0032993 | IBA | Gene Ontology | protein-DNA complex | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |