Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p16700 Brassica napus
A04p22710 Brassica napus
A10p05730 Brassica napus
Aa31LG5G6690 Aethionema arabicum
Actinidia34459 Actinidia chinensis
Ah.08g215390 Amaranthus hybridus
Ah.10g029440 Amaranthus hybridus
AL1G17290 Arabidopsis lyrata
AL4G24770 Arabidopsis lyrata
Aqoxy2G00855 Aquilegia oxysepala
Aqoxy4G02524 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8SD06N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.97DH5A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MS3UCN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MVD3XS Arachis hypogaea
AT1G07170 Arabidopsis thaliana
AT2G30000 Arabidopsis thaliana
ATR0681G380 Amborella trichopoda
Atru.chr3.4180 Acer truncatum
Atru.chr3.4191 Acer truncatum
Atru.chr4.1853 Acer truncatum
Atru.chr4.1855 Acer truncatum
AUR62001628 Chenopodium quinoa
AUR62020151 Chenopodium quinoa
BcaB01g04141 Brassica carinata
BcaB06g28334 Brassica carinata
BcaC01g06039 Brassica carinata
BcaC02g08063 Brassica carinata
BolC3t14345H Brassica oleracea
BolC4t27403H Brassica oleracea
BolC5t29296H Brassica oleracea
BraA03t10956Z Brassica rapa
BraA04t17812Z Brassica rapa
BraA10t42834Z Brassica rapa
C03p19660 Brassica napus
C04p58850 Brassica napus
C05p05250 Brassica napus
CAN.G551.25 Capsicum annuum
CANSAT54G2730 Cannabis sativa
CARHR006880 Cardamine hirsuta
CARHR123250 Cardamine hirsuta
Carub.0001s0646 Capsella rubella
Carub.0004s1110 Capsella rubella
Ca_14955_v3 Cicer arietinum L.
Ca_26489_v3 Cicer arietinum L.
Cc01_g14370 Coffea canephora
Cc10_g13550 Coffea canephora
Cfa011717 Carpinus fangiana
Ciclev10029623m.g Citrus clementina
CiPaw.13G075800 Carya illinoinensis
CiPaw.14G058100 Carya illinoinensis
COL.COLO4_07382 Corchorus olitorius
COL.COLO4_19184 Corchorus olitorius
Cpa.g.c25278.1 Carica papaya
Cre05.g234648 Chlamydomonas reinhardtii
CsaV3_1G036310 Cucumis sativus L.
CSS0011422 Camellia sinensis var. sinensis
CSS0014566 Camellia sinensis var. sinensis
CSS0030428 Camellia sinensis var. sinensis
DCAR_007368 Daucus carota
DCAR_007369 Daucus carota
DCAR_018691 Daucus carota
Dinv03098 Davidia involucrata
Dinv28655 Davidia involucrata
Duzib168G0533 Durio zibethinus
Duzib187G1427 Durio zibethinus
ECA248G1127 Erigeron canadensis
EL10Ac1g00657 Beta vulgaris
Eucgr.B02244 Eucalyptus grandis
Eucgr.J01890 Eucalyptus grandis
FAN02G1375 Fragaria x ananassa
FAN05G4803 Fragaria x ananassa
FAN07G2969 Fragaria x ananassa
FAN12G2029 Fragaria x ananassa
FAN12G3686 Fragaria x ananassa
FAN14G2220 Fragaria x ananassa
FAN14G2316 Fragaria x ananassa
FAN22G0846 Fragaria x ananassa
FAN25G3630 Fragaria x ananassa
FvH4_3g38910 Fragaria vesca
FvH4_4g10642 Fragaria vesca
FvH4_6g11260 Fragaria vesca
Glyma.11G173100 Glycine max
Glyma.18G061500 Glycine max
Gohir.A05G102701 Gossypium hirsutum
Gohir.A09G089300 Gossypium hirsutum
Gohir.A13G224000 Gossypium hirsutum
Gohir.A13G224050 Gossypium hirsutum
Gohir.D05G102400 Gossypium hirsutum
Gohir.D09G089400 Gossypium hirsutum
Gohir.D13G228800 Gossypium hirsutum
Gorai.006G105600 Gossypium raimondii
Gorai.009G106700 Gossypium raimondii
Gorai.013G259600 Gossypium raimondii
Gorai.013G259700 Gossypium raimondii
GSVIVG01024719001 Vitis vinifera
HanXRQChr05g0133781 Helianthus annuus
HanXRQChr11g0343551 Helianthus annuus
Haze_27409 Corylus avellana
Hma1.2p1_0111F.1_g053670 Hydrangea macrophylla
Hma1.2p1_0146F.1_g065640 Hydrangea macrophylla
Hma1.2p1_0962F.1_g241800 Hydrangea macrophylla
HPP92_021563 Vanilla planifolia
HPP92_021599 Vanilla planifolia
HPP92_024415 Vanilla planifolia
HPP92_027121 Vanilla planifolia
Hund18839 Selenicereus undatus
Lalb_Chr04g0253741 Lupinus albus
Lj6g0011974 Lotus japonicus
Lj6g0021579 Lotus japonicus
Lsat_1_v5_gn_1_80741 Lactuca sativa
Lsat_1_v5_gn_9_19781 Lactuca sativa
Manes.01G160200 Manihot esculenta
Manes.02G118400 Manihot esculenta
Manes.09G107500 Manihot esculenta
Mapoly0108s0030 Marchantia polymorpha
MBI03_g24258_MAGBIO Magnolia biondii
MBI04_g12747_MAGBIO Magnolia biondii
MBI04_g27124_MAGBIO Magnolia biondii
MBI05_g31235_MAGBIO Magnolia biondii
MCO01G390 Micromonas commoda
MD00G1079300 Malus domestica
MD00G1079900 Malus domestica
MD03G1066900 Malus domestica
MD03G1225300 Malus domestica
MD03G1225400 Malus domestica
MD04G1048100 Malus domestica
MD04G1155900 Malus domestica
MD04G1158500 Malus domestica
MD04G1158900 Malus domestica
MD11G1071700 Malus domestica
MD12G1169600 Malus domestica
MD12G1170100 Malus domestica
MD12G1170800 Malus domestica
Medtr3g464510 Medicago truncatula
Medtr4g022900 Medicago truncatula
MELO3C020538.2 Cucumis melo
Migut.E00506 Erythranthe guttata
Migut.J00146 Erythranthe guttata
MSTRG.13640 Avicennia marina
MSTRG.2112 Avicennia marina
Nitab4.5_0000416g0190 Nicotiana tabacum
Nitab4.5_0003041g0010 Nicotiana tabacum
Nitab4.5_0004402g0030 Nicotiana tabacum
Nitab4.5_0005330g0010 Nicotiana tabacum
Nn2g13154 Nelumbo nucifera
Nn4g24478 Nelumbo nucifera
Oeu034562.1 Olea europaea
Oeu038763.1 Olea europaea
Os04g0663300 Oryza sativa ssp. japonica
Os05g0367000 Oryza sativa ssp. japonica
Os11g0495400 Oryza sativa ssp. japonica
Peaxi162Scf00037g01326 Petunia axillaris
Peaxi162Scf00108g00410 Petunia axillaris
Peaxi162Scf00347g00413 Petunia axillaris
PGR031G2029 Punica granatum
PGR044G2205 Punica granatum
PGR142G0360 Punica granatum
PGSC0003DMG400007890 Solanum tuberosum
Phvul.001G038900 Phaseolus vulgaris
Phvul.006G069000 Phaseolus vulgaris
Potri.001G277700 Populus trichocarpa
Potri.001G277800 Populus trichocarpa
Potri.008G028300 Populus trichocarpa
Potri.009G072300 Populus trichocarpa
Potri.009G072400 Populus trichocarpa
Pp3c24_80 Physcomitrium patens
Pp3c6_23270 Physcomitrium patens
PRCOL_00000162 Prasinoderma coloniale
Prupe.1G203900 Prunus persica
Prupe.1G204600 Prunus persica
Prupe.6G055400 Prunus persica
Prupe.6G279400 Prunus persica
Psat5g157840 Pisum sativum
PSO063G4916 Papaver somniferum
PSO170G3018 Papaver somniferum
PSO339G2123 Papaver somniferum
PSO384G4851 Papaver somniferum
QL01p038711 Quercus lobata
QL04p012295 Quercus lobata
QL04p012353 Quercus lobata
QL04p012854 Quercus lobata
QL04p012882 Quercus lobata
QL04p012941 Quercus lobata
QL04p012971 Quercus lobata
RcHm_v2.0_Chr3g0462791 Rosa chinensis
RcHm_v2.0_Chr4g0406291 Rosa chinensis
RcHm_v2.0_Chr4g0442661 Rosa chinensis
RcHm_v2.0_Chr5g0070151 Rosa chinensis
RcHm_v2.0_Chr5g0075971 Rosa chinensis
Rhsim01G0219000 Rhododendron simsii
Rhsim01G0237400 Rhododendron simsii
Sabra09G0054500 Salix brachista
Sabra09G0054600 Salix brachista
Sabra16G0171700 Salix brachista
Sabra16G0171800 Salix brachista
SalBow4G0360 Salvia bowleyana
SalBow6G0627 Salvia bowleyana
Sc06g0008470 Simmondsia chinensis
Sc21g0006440 Simmondsia chinensis
Sed0006225 Sechium edule
Sed0020572 Sechium edule
SEGI_00332 Sequoiadendron giganteum
SGA_v2.0_scaffold23G10135 Striga asiatica
SGA_v2.0_scaffold75G25022 Striga asiatica
SHI24478 Sapria himalayana
SMO165G0159 Selaginella moellendorffii
Solyc12g010340.3 Solanum lycopersicum
Sopen12g005220 Solanum pennellii
Sp1g05940 Schrenkiella parvula
Sp4g12570 Schrenkiella parvula
TAR374G0477 Trochodendron aralioides
TAR622G1181 Trochodendron aralioides
TAR636G3219 Trochodendron aralioides
THA.LOC104800744 Tarenaya hassleriana
THA.LOC104826285 Tarenaya hassleriana
Thecc.07G150900 Theobroma cacao
Thecc.09G299400 Theobroma cacao
Thhalv10009159m.g Eutrema salsugineum
Thhalv10009739m.g Eutrema salsugineum
Thhalv10017457m.g Eutrema salsugineum
TPR.G15188 Trifolium pratense
TPR.G5602 Trifolium pratense
TWI38G0184 Tripterygium wilfordii
TWI39G0964 Tripterygium wilfordii
unitig_27.g24846 Utricularia gibba
vmacro14602 Vaccinium macrocarpon
VMungo0540G0010 Vigna mungo

User provided reference genes

Program Settings