Gene: Solyc12g010340.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc12g010340.3
- Transcript Identifier Solyc12g010340.3.1
- Gene Type Coding gene
- Location SL4.0ch12 : 3447083-3447415 : positive
Gene Family Information
- ID HOM05D003017
- #Genes/#Species 228/94
- Phylogenetic origin
- ID ORTHO05D003388
- #Genes/#Species 226/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc12g010340.3.1
- uniprot A0A3Q7J4E0
- gene_id Solyc12g010340
Descriptions
- Description PHD finger-like domain-containing protein 5A (AHRD V3.3 *** A0A1U8E1D6_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IBA IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005686 | IBA | GOA Database | U2 snRNP | |
| GO:0005689 | IBA | GOA Database | U12-type spliceosomal complex | |
| GO:0071011 | IBA | GOA Database | precatalytic spliceosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005345 | PHF5-like |
| Mapman id | Description |
|---|---|
| 16.2.1.2.5 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (PHF5) |