Gene: AT2G30000
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G30000
- Transcript Identifier AT2G30000.1
- Gene Type Coding gene
- Location Chr2 : 12804042-12804374 : negative
Gene Family Information
- ID HOM05D003017
- #Genes/#Species 228/94
- Phylogenetic origin
- ID ORTHO05D003388
- #Genes/#Species 226/94
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G30000.1
- uniprot A0A178W5C0
Descriptions
- Description PHF5-like protein
- Computational description PHF5-like protein; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT1G07170.3); Has 420 Blast hits to 420 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 128; Plants - 86; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IBA | Gene Ontology | mRNA splicing, via spliceosome | 1 |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0071011 | IBA | Gene Ontology | precatalytic spliceosome | 1 |
| GO:0005689 | IBA | Gene Ontology | U12-type spliceosomal complex | 1 |
| GO:0005686 | IBA | Gene Ontology | U2 snRNP | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005345 | PHF5-like |
| Mapman id | Description |
|---|---|
| 16.2.1.2.5 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (PHF5) |