Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p24970 Brassica napus
A06p28410 Brassica napus
Aa31LG4G18140 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_292.2 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2759 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1648 Anthoceros agrestis
Actinidia09125 Actinidia chinensis
Actinidia11939 Actinidia chinensis
Actinidia36393 Actinidia chinensis
Ah.06g195170 Amaranthus hybridus
Ah.11g050560 Amaranthus hybridus
AL5G29510 Arabidopsis lyrata
AL6G50240 Arabidopsis lyrata
AL6G50270 Arabidopsis lyrata
Aqoxy2G03372 Aquilegia oxysepala
Aqoxy5G01866 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1UYX1F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DT5KC6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FR17PC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MJC5Q8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NISQ8K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RFJS66 Arachis hypogaea
AT3G49660 Arabidopsis thaliana
AT4G02730 Arabidopsis thaliana
ATR0332G039 Amborella trichopoda
ATR0332G110 Amborella trichopoda
Atru.chr3.1120 Acer truncatum
Atru.chr5.1459 Acer truncatum
AUR62000261 Chenopodium quinoa
AUR62006609 Chenopodium quinoa
BcaB01g00685 Brassica carinata
BcaB01g02009 Brassica carinata
BcaB05g23663 Brassica carinata
BcaC01g02426 Brassica carinata
BcaC03g16173 Brassica carinata
BolC2t09917H Brassica oleracea
BolC3t18794H Brassica oleracea
BraA02t07487Z Brassica rapa
BraA06t24894Z Brassica rapa
BraA06t25785Z Brassica rapa
C02p39070 Brassica napus
C03p06110 Brassica napus
C03p65420 Brassica napus
CANSAT01G2837 Cannabis sativa
CANSAT56G2303 Cannabis sativa
CARHR158730 Cardamine hirsuta
CARHR251070 Cardamine hirsuta
CARHR279680 Cardamine hirsuta
Carub.0005s1601 Capsella rubella
Carub.0006s3437 Capsella rubella
Carub.0008s2659 Capsella rubella
Ca_09752_v3 Cicer arietinum L.
Ca_14440_v3 Cicer arietinum L.
Cc03_g10690 Coffea canephora
Cc07_g07680 Coffea canephora
CDE04G2187 Ceratophyllum demersum
CDE05G3340 Ceratophyllum demersum
CDE06G1770 Ceratophyllum demersum
Cfa006157 Carpinus fangiana
Cfa006809 Carpinus fangiana
Ciclev10021263m.g Citrus clementina
Ciclev10026097m.g Citrus clementina
Ciclev10033651m.g Citrus clementina
CiPaw.07G041100 Carya illinoinensis
CiPaw.07G090800 Carya illinoinensis
ClCG01G018070 Citrullus lanatus
ClCG09G007120 Citrullus lanatus
COL.COLO4_09075 Corchorus olitorius
COL.COLO4_11661 Corchorus olitorius
Cpa.g.sc129.34 Carica papaya
Cpa.g.sc52.53 Carica papaya
CsaV3_6G044600 Cucumis sativus L.
CsaV3_7G028040 Cucumis sativus L.
CSS0015908 Camellia sinensis var. sinensis
CSS0032407 Camellia sinensis var. sinensis
CSS0049699 Camellia sinensis var. sinensis
DCAR_005275 Daucus carota
DCAR_012486 Daucus carota
DCAR_017974 Daucus carota
Dinv26988 Davidia involucrata
Dinv34766 Davidia involucrata
Dinv36997 Davidia involucrata
Duzib138G1878 Durio zibethinus
Duzib147G1423 Durio zibethinus
Duzib187G0476 Durio zibethinus
ECA238G4010 Erigeron canadensis
ECA247G3845 Erigeron canadensis
EL10Ac4g10037 Beta vulgaris
EL10Ac5g10558 Beta vulgaris
Eucgr.H02400 Eucalyptus grandis
Eucgr.K03366 Eucalyptus grandis
FAN19G1191 Fragaria x ananassa
FAN23G1457 Fragaria x ananassa
FAN28G1172 Fragaria x ananassa
FvH4_1g18760 Fragaria vesca
FvH4_2g23370 Fragaria vesca
Glyma.02G146800 Glycine max
Glyma.07G248900 Glycine max
Glyma.10G027100 Glycine max
Glyma.17G025400 Glycine max
Gohir.A08G045160 Gossypium hirsutum
Gohir.A11G210200 Gossypium hirsutum
Gohir.D08G055200 Gossypium hirsutum
Gohir.D11G212900 Gossypium hirsutum
Gorai.004G055700 Gossypium raimondii
Gorai.007G228800 Gossypium raimondii
GSVIVG01001162001 Vitis vinifera
GSVIVG01003702001 Vitis vinifera
HanXRQChr10g0282271 Helianthus annuus
HanXRQChr14g0447041 Helianthus annuus
Haze_03949 Corylus avellana
Haze_04694 Corylus avellana
Haze_27348 Corylus avellana
Hma1.2p1_0667F.1_g199660 Hydrangea macrophylla
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla
HPP92_012269 Vanilla planifolia
HPP92_017535 Vanilla planifolia
HPP92_020621 Vanilla planifolia
Hund02771 Selenicereus undatus
Hund07388 Selenicereus undatus
Lalb_Chr07g0177661 Lupinus albus
Lalb_Chr13g0303681 Lupinus albus
Lalb_Chr21g0306431 Lupinus albus
Lj2A1170T16 Lonicera japonica
Lj2C426T10 Lonicera japonica
Lj2C426T11 Lonicera japonica
Lj4A173G12 Lonicera japonica
Lj4g0007346 Lotus japonicus
Lj5g0020766 Lotus japonicus
Lsat_1_v5_gn_2_81981 Lactuca sativa
Lsat_1_v5_gn_4_28161 Lactuca sativa
Lsat_1_v5_gn_9_3501 Lactuca sativa
Manes.01G207000 Manihot esculenta
Manes.12G119800 Manihot esculenta
Mapoly0035s0097 Marchantia polymorpha
MBI04_g36449_MAGBIO Magnolia biondii
MBI16_g14668_MAGBIO Magnolia biondii
MD01G1047000 Malus domestica
MD03G1263200 Malus domestica
MD16G1282400 Malus domestica
Medtr1g072140 Medicago truncatula
Medtr4g119620 Medicago truncatula
MELO3C015824.2 Cucumis melo
Migut.D00309 Erythranthe guttata
Migut.H00305 Erythranthe guttata
MSTRG.18239 Avicennia marina
Nitab4.5_0000093g0160 Nicotiana tabacum
Nitab4.5_0000396g0220 Nicotiana tabacum
Nitab4.5_0004318g0010 Nicotiana tabacum
Nitab4.5_0005971g0020 Nicotiana tabacum
Nn1g05606 Nelumbo nucifera
Nn1g05949 Nelumbo nucifera
Nn4g26296 Nelumbo nucifera
Oeu012607.1 Olea europaea
Oeu025000.1 Olea europaea
Oeu054736.1 Olea europaea
Os03g0725400 Oryza sativa ssp. japonica
Os07g0572000 Oryza sativa ssp. japonica
Peaxi162Scf00641g00318 Petunia axillaris
Peaxi162Scf00939g00121 Petunia axillaris
PGR031G0631 Punica granatum
PGR044G0058 Punica granatum
PGSC0003DMG400019361 Solanum tuberosum
PGSC0003DMG401030621 Solanum tuberosum
Phvul.003G104000 Phaseolus vulgaris
Phvul.007G172600 Phaseolus vulgaris
Potri.002G051900 Populus trichocarpa
Potri.005G148500 Populus trichocarpa
Potri.007G009500 Populus trichocarpa
Prupe.6G211800 Prunus persica
Prupe.8G239500 Prunus persica
Psat0s2006g0120 Pisum sativum
Psat0s2006g0160 Pisum sativum
Psat6g060720 Pisum sativum
PSO210G2619 Papaver somniferum
PSO541G4758 Papaver somniferum
PSO675G4958 Papaver somniferum
PSO761G0421 Papaver somniferum
QL06p037843 Quercus lobata
QL12p021366 Quercus lobata
RcHm_v2.0_Chr2g0109631 Rosa chinensis
RcHm_v2.0_Chr6g0290821 Rosa chinensis
Rhsim10G0085400 Rhododendron simsii
Rhsim13G0026000 Rhododendron simsii
Sabra07G0007300 Salix brachista
SalBow3G3920 Salvia bowleyana
SalBow4G2517 Salvia bowleyana
Sc09g0001310 Simmondsia chinensis
Sc17g0001450 Simmondsia chinensis
Sed0026548 Sechium edule
Sed0027180 Sechium edule
SEGI_03976 Sequoiadendron giganteum
SEGI_07764 Sequoiadendron giganteum
SEGI_09700 Sequoiadendron giganteum
SEGI_40787 Sequoiadendron giganteum
SGA_v2.0_scaffold121G33104 Striga asiatica
SGA_v2.0_scaffold138G35332 Striga asiatica
SGA_v2.0_scaffold1G00490 Striga asiatica
SHI12121 Sapria himalayana
SMO119G0268 Selaginella moellendorffii
Solyc02g091790.3 Solanum lycopersicum
Solyc09g065290.4 Solanum lycopersicum
Sopen02g036370 Solanum pennellii
Sopen09g027040 Solanum pennellii
Sp5g12420 Schrenkiella parvula
Sp6g02690 Schrenkiella parvula
TAR365G0759 Trochodendron aralioides
TAR376G1143 Trochodendron aralioides
TAR628G0306 Trochodendron aralioides
TAR629G3468 Trochodendron aralioides
TAR636G0178 Trochodendron aralioides
TAR636G0694 Trochodendron aralioides
THA.LOC104798430 Tarenaya hassleriana
THA.LOC104815938 Tarenaya hassleriana
Thecc.01G081600 Theobroma cacao
Thecc.01G277000 Theobroma cacao
Thhalv10010551m.g Eutrema salsugineum
Thhalv10028762m.g Eutrema salsugineum
TPR.G3207 Trifolium pratense
TPR.G9116 Trifolium pratense
TWI53G1603 Tripterygium wilfordii
TWI59G0374 Tripterygium wilfordii
TWI74G1409 Tripterygium wilfordii
unitig_0.g486 Utricularia gibba
vmacro02582 Vaccinium macrocarpon
vmacro02583 Vaccinium macrocarpon
vmacro05467 Vaccinium macrocarpon
VMungo0251G3091 Vigna mungo
VMungo0720G0375 Vigna mungo
VMungo1215G0795 Vigna mungo
Zm00001eb055840 Zea mays
Zm00001eb276600 Zea mays
Zm00001eb325000 Zea mays
Zm00001eb325010 Zea mays

User provided reference genes

Program Settings