Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02280 Brassica napus
A03p47990 Brassica napus
A03p64360 Brassica napus
A07p02380 Brassica napus
A07p17430 Brassica napus
A08p22250 Brassica napus
A09p11890 Brassica napus
A09p43980 Brassica napus
Aa31LG1G15070 Aethionema arabicum
Aa31LG4G18980 Aethionema arabicum
Aa31LG6G13420 Aethionema arabicum
Aa31LG8G15650 Aethionema arabicum
Actinidia19189 Actinidia chinensis
Actinidia35635 Actinidia chinensis
Actinidia36564 Actinidia chinensis
Ah.02g125160 Amaranthus hybridus
Ah.03g140920 Amaranthus hybridus
AL3G51660 Arabidopsis lyrata
AL5G31220 Arabidopsis lyrata
AL7G14450 Arabidopsis lyrata
Aqoxy1G00027 Aquilegia oxysepala
Aqoxy1G00031 Aquilegia oxysepala
Aqoxy5G01614 Aquilegia oxysepala
Aqoxy6G01126 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3J6WSK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TF5DD7 Arachis hypogaea
AT2G18380 Arabidopsis thaliana
AT3G50870 Arabidopsis thaliana
AT4G36620 Arabidopsis thaliana
ATR0605G204 Amborella trichopoda
Atru.chr3.584 Acer truncatum
AUR62004058 Chenopodium quinoa
AUR62007572 Chenopodium quinoa
BcaB01g00571 Brassica carinata
BcaB02g10017 Brassica carinata
BcaB03g16645 Brassica carinata
BcaB05g23248 Brassica carinata
BcaB07g31670 Brassica carinata
BcaC01g00458 Brassica carinata
BcaC04g22907 Brassica carinata
BcaC06g33073 Brassica carinata
BcaC06g33328 Brassica carinata
BcaC06g34716 Brassica carinata
BcaC06g36404 Brassica carinata
BcaC07g39553 Brassica carinata
BcaNung00717 Brassica carinata
BcaNung04424 Brassica carinata
BcaNung05454 Brassica carinata
BcaNung06117 Brassica carinata
BolC1t00237H Brassica oleracea
BolC3t20261H Brassica oleracea
BolC7t40843H Brassica oleracea
BolC7t45118H Brassica oleracea
BolC7t46601H Brassica oleracea
BolC8t50226H Brassica oleracea
BolC9t54292H Brassica oleracea
BraA01t00214Z Brassica rapa
BraA03t13907Z Brassica rapa
BraA03t15501Z Brassica rapa
BraA07t28031Z Brassica rapa
BraA07t29464Z Brassica rapa
BraA08t34185Z Brassica rapa
BraA09t36834Z Brassica rapa
BraA09t39856Z Brassica rapa
C01p02490 Brassica napus
C03p80070 Brassica napus
C07p04480 Brassica napus
C07p46000 Brassica napus
C07p61780 Brassica napus
C08p26080 Brassica napus
C09p13970 Brassica napus
CAN.G358.75 Capsicum annuum
CAN.G358.81 Capsicum annuum
CAN.G53.34 Capsicum annuum
CANSAT01G0662 Cannabis sativa
CARHR108970 Cardamine hirsuta
CARHR160420 Cardamine hirsuta
CARHR244960 Cardamine hirsuta
Carub.0003s3253 Capsella rubella
Carub.0005s1726 Capsella rubella
Carub.0007s0371 Capsella rubella
Ca_22272_v3 Cicer arietinum L.
Ca_22285_v3 Cicer arietinum L.
Cc06_g19010 Coffea canephora
Cc07_g09570 Coffea canephora
CDE11G0671 Ceratophyllum demersum
CDE11G0850 Ceratophyllum demersum
Cfa004312 Carpinus fangiana
Ciclev10026328m.g Citrus clementina
CiPaw.01G039700 Carya illinoinensis
CiPaw.02G018300 Carya illinoinensis
CiPaw.14G129300 Carya illinoinensis
ClCG01G019610 Citrullus lanatus
ClCG07G008580 Citrullus lanatus
COL.COLO4_22071 Corchorus olitorius
Cpa.g.sc6.118 Carica papaya
CsaV3_4G005580 Cucumis sativus L.
CsaV3_6G046280 Cucumis sativus L.
CSS0011225 Camellia sinensis var. sinensis
DCAR_025944 Daucus carota
Dinv39991 Davidia involucrata
Duzib147G0090 Durio zibethinus
Duzib187G1642 Durio zibethinus
Duzib264G0021 Durio zibethinus
ECA232G4233 Erigeron canadensis
ECA238G2790 Erigeron canadensis
ECA246G3001 Erigeron canadensis
EL10Ac6g15556 Beta vulgaris
FAN19G1680 Fragaria x ananassa
FAN23G0400 Fragaria x ananassa
FAN25G1596 Fragaria x ananassa
FAN28G0047 Fragaria x ananassa
FvH4_1g13230 Fragaria vesca
Glyma.02G056600 Glycine max
Glyma.08G142500 Glycine max
Glyma.11G068700 Glycine max
Glyma.16G139400 Glycine max
Gohir.A02G166000 Gossypium hirsutum
Gohir.A11G184000 Gossypium hirsutum
Gohir.A12G064700 Gossypium hirsutum
Gohir.D03G014000 Gossypium hirsutum
Gohir.D11G190500 Gossypium hirsutum
Gohir.D12G064700 Gossypium hirsutum
Gorai.003G014300 Gossypium raimondii
Gorai.007G202900 Gossypium raimondii
Gorai.008G067800 Gossypium raimondii
GSVIVG01018951001 Vitis vinifera
HanXRQChr07g0192871 Helianthus annuus
HanXRQChr09g0274611 Helianthus annuus
HanXRQChr14g0441171 Helianthus annuus
HanXRQChr16g0530461 Helianthus annuus
Haze_15081 Corylus avellana
Hma1.2p1_0224F.1_g094591 Hydrangea macrophylla
Hma1.2p1_0224F.1_g094610 Hydrangea macrophylla
HPP92_008057 Vanilla planifolia
HPP92_023410 Vanilla planifolia
HPP92_026376 Vanilla planifolia
Hund16433 Selenicereus undatus
Lalb_Chr05g0212781 Lupinus albus
Lalb_Chr09g0322361 Lupinus albus
Lalb_Chr15g0089331 Lupinus albus
Lalb_Chr16g0377801 Lupinus albus
Lj2g0005931 Lotus japonicus
Lj4A202G40 Lonicera japonica
Lj6g0026752 Lotus japonicus
LjContig00448g0012850 Lotus japonicus
Lsat_1_v5_gn_2_76320 Lactuca sativa
Lsat_1_v5_gn_3_76460 Lactuca sativa
Lsat_1_v5_gn_4_148820 Lactuca sativa
Manes.01G135900 Manihot esculenta
Manes.02G094300 Manihot esculenta
MBI10_g41093_MAGBIO Magnolia biondii
MD02G1146800 Malus domestica
MD15G1260900 Malus domestica
Medtr5g020230 Medicago truncatula
Medtr8g077510 Medicago truncatula
MELO3C007831.2 Cucumis melo
MELO3C014645.2 Cucumis melo
MELO3C016391.2 Cucumis melo
Migut.L00521 Erythranthe guttata
MSTRG.15271 Avicennia marina
Nitab4.5_0000136g0370 Nicotiana tabacum
Nitab4.5_0000178g0100 Nicotiana tabacum
Nitab4.5_0005358g0010 Nicotiana tabacum
Nitab4.5_0009263g0010 Nicotiana tabacum
Nn1g04972 Nelumbo nucifera
Nn2g15663 Nelumbo nucifera
Nn5g28778 Nelumbo nucifera
Nn5g29627 Nelumbo nucifera
Nn7g36016 Nelumbo nucifera
Oeu012598.1 Olea europaea
Oeu033647.1 Olea europaea
Oeu042267.1 Olea europaea
Oeu061622.1 Olea europaea
Oeu063201.1 Olea europaea
Peaxi162Scf00008g03610 Petunia axillaris
Peaxi162Scf00366g00123 Petunia axillaris
PGR102G0185 Punica granatum
PGR102G2913 Punica granatum
PGSC0003DMG400003508 Solanum tuberosum
PGSC0003DMG400015502 Solanum tuberosum
Phvul.002G030800 Phaseolus vulgaris
Phvul.003G253900 Phaseolus vulgaris
Potri.005G122700 Populus trichocarpa
Potri.007G024500 Populus trichocarpa
Prupe.7G155400 Prunus persica
Psat2g159120 Pisum sativum
Psat4g093200 Pisum sativum
PSO170G0088 Papaver somniferum
PSO675G7381 Papaver somniferum
PSO764G0036 Papaver somniferum
QL06p046258 Quercus lobata
RcHm_v2.0_Chr2g0101421 Rosa chinensis
Rhsim10G0116700 Rhododendron simsii
Sabra05G0100800 Salix brachista
Sabra07G0021600 Salix brachista
SalBow5G2862 Salvia bowleyana
Sc16g0002720 Simmondsia chinensis
Sed0004737 Sechium edule
Sed0006568 Sechium edule
Sed0013826 Sechium edule
Sed0015276 Sechium edule
Sed0016428 Sechium edule
SGA_v2.0_scaffold78G25408 Striga asiatica
SHI22859 Sapria himalayana
Solyc02g062760.4 Solanum lycopersicum
Solyc02g085190.2 Solanum lycopersicum
Sopen02g013790 Solanum pennellii
Sopen02g029890 Solanum pennellii
Sp2g30170 Schrenkiella parvula
Sp3g31790 Schrenkiella parvula
Sp5g11350 Schrenkiella parvula
Sp7g34270 Schrenkiella parvula
SpUn0030_0040 Schrenkiella parvula
TAR381G0635 Trochodendron aralioides
TAR628G1192 Trochodendron aralioides
THA.LOC104807450 Tarenaya hassleriana
THA.LOC104816915 Tarenaya hassleriana
THA.LOC104819206 Tarenaya hassleriana
THA.LOC104819784 Tarenaya hassleriana
THA.LOC104821289 Tarenaya hassleriana
Thecc.01G034600 Theobroma cacao
Thhalv10010986m.g Eutrema salsugineum
Thhalv10022854m.g Eutrema salsugineum
Thhalv10027520m.g Eutrema salsugineum
TPR.G22280 Trifolium pratense
TPR.G24137 Trifolium pratense
TWI09G1027 Tripterygium wilfordii
unitig_27.g24983 Utricularia gibba
unitig_736.g22544 Utricularia gibba
unitig_899.g14493 Utricularia gibba
vmacro05345 Vaccinium macrocarpon
VMungo0251G2949 Vigna mungo
VMungo1215G2595 Vigna mungo
Zm00001eb344540 Zea mays

User provided reference genes

Program Settings