Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p08300 Brassica napus
A10p04180 Brassica napus
Aa31LG1G19180 Aethionema arabicum
Actinidia04334 Actinidia chinensis
Ah.07g204230 Amaranthus hybridus
AL1G15300 Arabidopsis lyrata
Aqoxy5G00438 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.IF8NHZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SX262Z Arachis hypogaea
AT1G05460 Arabidopsis thaliana
ATR0618G110 Amborella trichopoda
ATR0618G119 Amborella trichopoda
ATR0665G272 Amborella trichopoda
Atru.chr11.1104 Acer truncatum
Atru.chr11.1111 Acer truncatum
Atru.chr11.1113 Acer truncatum
Atru.chr4.2430 Acer truncatum
Atru.ctg727.2 Acer truncatum
AUR62000846 Chenopodium quinoa
AUR62005129 Chenopodium quinoa
BcaB02g06857 Brassica carinata
BcaC05g24383 Brassica carinata
BolC5t29158H Brassica oleracea
BraA10t42687Z Brassica rapa
C05p03810 Brassica napus
CAN.G231.13 Capsicum annuum
CANSAT78G1480 Cannabis sativa
CANSAT78G2191 Cannabis sativa
CARHR004950 Cardamine hirsuta
Carub.0001s0479 Capsella rubella
Ca_24420_v3 Cicer arietinum L.
CBR_g10879 Chara braunii
CBR_g34008 Chara braunii
CBR_g44358 Chara braunii
CBR_g44365 Chara braunii
CBR_g44368 Chara braunii
Cc02_g31310 Coffea canephora
Cc03_g04040 Coffea canephora
Cc11_g01040 Coffea canephora
Cc11_g01050 Coffea canephora
CDE06G1398 Ceratophyllum demersum
CDE07G0808 Ceratophyllum demersum
Cfa003109 Carpinus fangiana
Cfa008472 Carpinus fangiana
Cfa008768 Carpinus fangiana
Ciclev10000353m.g Citrus clementina
Ciclev10004283m.g Citrus clementina
Ciclev10030734m.g Citrus clementina
Ciclev10030791m.g Citrus clementina
Ciclev10031085m.g Citrus clementina
Ciclev10033310m.g Citrus clementina
Ciclev10033534m.g Citrus clementina
CiPaw.01G198300 Carya illinoinensis
ClCG06G006340 Citrullus lanatus
COL.COLO4_13640 Corchorus olitorius
COL.COLO4_21516 Corchorus olitorius
COL.COLO4_33089 Corchorus olitorius
Cpa.g.sc117.40 Carica papaya
Cpa.g.sc60.77 Carica papaya
Cre12.g542450 Chlamydomonas reinhardtii
Cre15.g641650 Chlamydomonas reinhardtii
CsaV3_7G022380 Cucumis sativus L.
CSS0000686 Camellia sinensis var. sinensis
CSS0007282 Camellia sinensis var. sinensis
CSS0010776 Camellia sinensis var. sinensis
CSS0024605 Camellia sinensis var. sinensis
CSS0027055 Camellia sinensis var. sinensis
CSS0031002 Camellia sinensis var. sinensis
CSS0037612 Camellia sinensis var. sinensis
DCAR_002375 Daucus carota
DCAR_002600 Daucus carota
DCAR_002601 Daucus carota
DCAR_018493 Daucus carota
DCAR_023470 Daucus carota
Dinv14015 Davidia involucrata
Dinv17129 Davidia involucrata
Dinv17741 Davidia involucrata
Dinv20810 Davidia involucrata
Duzib052G0279 Durio zibethinus
Duzib052G1003 Durio zibethinus
Duzib151G1175 Durio zibethinus
Duzib177G0218 Durio zibethinus
ECA236G4457 Erigeron canadensis
EL10Ac4g09337 Beta vulgaris
Eucgr.H03436 Eucalyptus grandis
Eucgr.H04399 Eucalyptus grandis
Eucgr.J00884 Eucalyptus grandis
Eucgr.J00890 Eucalyptus grandis
Eucgr.J03176 Eucalyptus grandis
FAN07G0901 Fragaria x ananassa
FAN07G0972 Fragaria x ananassa
FAN12G0500 Fragaria x ananassa
FAN12G3862 Fragaria x ananassa
FAN17G1329 Fragaria x ananassa
FAN17G2872 Fragaria x ananassa
FAN22G0261 Fragaria x ananassa
FvH4_4g15972 Fragaria vesca
FvH4_4g37100 Fragaria vesca
Glyma.01G235200 Glycine max
Gohir.A01G012200 Gossypium hirsutum
Gohir.A09G217400 Gossypium hirsutum
Gohir.A11G256800 Gossypium hirsutum
Gohir.D01G013400 Gossypium hirsutum
Gohir.D09G219800 Gossypium hirsutum
Gohir.D11G266600 Gossypium hirsutum
Gorai.002G015200 Gossypium raimondii
Gorai.006G240800 Gossypium raimondii
Gorai.007G286400 Gossypium raimondii
GSVIVG01018011001 Vitis vinifera
HanXRQChr02g0033141 Helianthus annuus
HanXRQChr04g0095851 Helianthus annuus
HanXRQChr04g0095861 Helianthus annuus
HanXRQChr04g0115171 Helianthus annuus
HanXRQChr04g0115181 Helianthus annuus
Haze_11201 Corylus avellana
Haze_11780 Corylus avellana
Hma1.2p1_0262F.1_g105390 Hydrangea macrophylla
Hma1.2p1_0262F.1_g105420 Hydrangea macrophylla
HPP92_006123 Vanilla planifolia
Hund10646 Selenicereus undatus
Lalb_Chr16g0376481 Lupinus albus
Lj3A732T73 Lonicera japonica
Lj3E732T0 Lonicera japonica
Lj6A714G14 Lonicera japonica
Lj6C25T8 Lonicera japonica
Lj9C239G4 Lonicera japonica
Lj9C239T4 Lonicera japonica
Lj9C239T5 Lonicera japonica
LjContig00222g0014636 Lotus japonicus
Lsat_1_v5_gn_9_80360 Lactuca sativa
Manes.03G175900 Manihot esculenta
Manes.07G109504 Manihot esculenta
Manes.07G109600 Manihot esculenta
Manes.07G109900 Manihot esculenta
Mapoly0078s0007 Marchantia polymorpha
MBI03_g01414_MAGBIO Magnolia biondii
MBI03_g01415_MAGBIO Magnolia biondii
MBI03_g13827_MAGBIO Magnolia biondii
MBI05_g12094_MAGBIO Magnolia biondii
MCO13G517 Micromonas commoda
MD13G1196500 Malus domestica
MD13G1238300 Malus domestica
MD16G1243100 Malus domestica
MD16G1243200 Malus domestica
Medtr2g049990 Medicago truncatula
Medtr5g006890 Medicago truncatula
MELO3C012664.2 Cucumis melo
Migut.G00361 Erythranthe guttata
Nitab4.5_0000321g0190 Nicotiana tabacum
Nitab4.5_0002361g0230 Nicotiana tabacum
Nitab4.5_0002840g0170 Nicotiana tabacum
Nitab4.5_0006783g0030 Nicotiana tabacum
Nn1g02374 Nelumbo nucifera
Nn3g18604 Nelumbo nucifera
Oeu001544.1 Olea europaea
Oeu001547.1 Olea europaea
Oeu018974.1 Olea europaea
Os03g0160400 Oryza sativa ssp. japonica
Peaxi162Scf00131g00027 Petunia axillaris
PGR004G0456 Punica granatum
PGR004G1808 Punica granatum
PGSC0003DMG400016265 Solanum tuberosum
PGSC0003DMG400016310 Solanum tuberosum
Phvul.002G042600 Phaseolus vulgaris
Potri.005G047500 Populus trichocarpa
Potri.005G089800 Populus trichocarpa
Potri.007G074070 Populus trichocarpa
Potri.008G155400 Populus trichocarpa
Pp3c12_8920 Physcomitrium patens
Pp3c4_21380 Physcomitrium patens
PRCOL_00005108 Prasinoderma coloniale
Prupe.1G017300 Prunus persica
Prupe.1G070100 Prunus persica
Prupe.1G070200 Prunus persica
Prupe.1G070300 Prunus persica
Prupe.1G070400 Prunus persica
Psat2g190040 Pisum sativum
PSO210G3945 Papaver somniferum
PSO832G1692 Papaver somniferum
QL04p079501 Quercus lobata
QL04p079513 Quercus lobata
QL04p079558 Quercus lobata
QL04p079598 Quercus lobata
QL04p079604 Quercus lobata
QL04p079624 Quercus lobata
QL04p079654 Quercus lobata
QL04p079664 Quercus lobata
QL04p079673 Quercus lobata
QL06p001686 Quercus lobata
RcHm_v2.0_Chr1g0318071 Rosa chinensis
RcHm_v2.0_Chr1g0318111 Rosa chinensis
RcHm_v2.0_Chr4g0415581 Rosa chinensis
RcHm_v2.0_Chr4g0446861 Rosa chinensis
RcHm_v2.0_Chr4g0446881 Rosa chinensis
RcHm_v2.0_Chr4g0446891 Rosa chinensis
Rhsim04G0200000 Rhododendron simsii
Rhsim04G0216200 Rhododendron simsii
Rhsim04G0216300 Rhododendron simsii
Rhsim05G0149800 Rhododendron simsii
Sabra05G0073900 Salix brachista
SalBow2G0283 Salvia bowleyana
Sc13g0004580 Simmondsia chinensis
Sed0008697 Sechium edule
Sed0017560 Sechium edule
Sed0023639 Sechium edule
SEGI_07136 Sequoiadendron giganteum
SEGI_10221 Sequoiadendron giganteum
SGA_v2.0_scaffold191G40493 Striga asiatica
SMO223G0021 Selaginella moellendorffii
SMO223G0037 Selaginella moellendorffii
Solyc06g054020.3 Solanum lycopersicum
Solyc06g054050.3 Solanum lycopersicum
Sopen06g019190 Solanum pennellii
Sopen06g019210 Solanum pennellii
Sp1g04340 Schrenkiella parvula
TAR260G0006 Trochodendron aralioides
TAR622G0765 Trochodendron aralioides
TAR636G1187 Trochodendron aralioides
TAR719G0001 Trochodendron aralioides
TAR719G0002 Trochodendron aralioides
THA.LOC104800956 Tarenaya hassleriana
Thecc.02G155900 Theobroma cacao
Thecc.02G156400 Theobroma cacao
Thecc.04G235200 Theobroma cacao
Thecc.05G291200 Theobroma cacao
Thhalv10006684m.g Eutrema salsugineum
TPR.G37897 Trifolium pratense
TPR.G38022 Trifolium pratense
TWI12G1273 Tripterygium wilfordii
TWI53G0907 Tripterygium wilfordii
TWI53G1427 Tripterygium wilfordii
unitig_41.g31654 Utricularia gibba
unitig_899.g14831 Utricularia gibba
unitig_899.g14832 Utricularia gibba
unitig_899.g14833 Utricularia gibba
vmacro14855 Vaccinium macrocarpon
vmacro19508 Vaccinium macrocarpon
VMungo0251G0587 Vigna mungo
VMungo0251G2242 Vigna mungo
VMungo1215G2311 Vigna mungo
Zm00001eb004540 Zea mays
Zm00001eb403310 Zea mays

User provided reference genes

Program Settings