Gene: Sopen06g019190

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g019190
  • Transcript Identifier Sopen06g019190.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 46622726-46627882 : positive

Gene Family Information

  • ID HOM05D002863
  • #Genes/#Species 242/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g019190.1

Descriptions

  • Description Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. | SILENCING DEFECTIVE (SDE3) | FUNCTIONS IN: RNA helicase activity | INVOLVED IN: virus induced gene silencing | LOCATED IN: cellular_component unknown | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit , DNA helicase, UvrD/REP type | BEST Arabidopsis thaliana protein match is: RNA helicase, putative
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009616
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immune response AT1G05460
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT1G05460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
InterProhelicase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G05460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041677 DNA2/NAM7 helicase, helicase domain
IPR041679 DNA2/NAM7 helicase-like, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR045055 DNA2/NAM7-like helicase
Mapman id Description
35.1 not assigned.annotated