Gene: Solyc06g054020.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g054020.3
  • Transcript Identifier Solyc06g054020.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 34677717-34682871 : positive

Gene Family Information

  • ID HOM05D002863
  • #Genes/#Species 242/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g054020.3.1
  • uniprot A0A3Q7GWM0
  • gene_id Solyc06g054020

Descriptions

  • Description p-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** A0A1P8AMM9_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035194
IBA
GOA Databasepost-transcriptional gene silencing by RNA
GO:0009616
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immune response AT1G05460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G05460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043186
IBA
GOA DatabaseP granule
GO:0005829
IBA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041679 DNA2/NAM7 helicase-like, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR045055 DNA2/NAM7-like helicase
IPR041677 DNA2/NAM7 helicase, helicase domain
Mapman id Description
35.1 not assigned.annotated