Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p32100 Brassica napus
A05p30160 Brassica napus
A07p44080 Brassica napus
Aa31LG4G2090 Aethionema arabicum
Aa31LG8G6190 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3436 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5305 Anthoceros agrestis
Actinidia06294 Actinidia chinensis
Actinidia27973 Actinidia chinensis
Ah.01g023800 Amaranthus hybridus
Ah.15g094290 Amaranthus hybridus
AL2G39330 Arabidopsis lyrata
AL3G32850 Arabidopsis lyrata
Aqoxy6G00529 Aquilegia oxysepala
Aqoxy6G02859 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4E6LTA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FXBY81 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KFV4RW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L445E4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L8QCG0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MZV5RQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NWX9CP Arachis hypogaea
AT1G78910 Arabidopsis thaliana
AT3G19440 Arabidopsis thaliana
ATR0051G021 Amborella trichopoda
ATR0589G068 Amborella trichopoda
Atru.chr1.2642 Acer truncatum
Atru.chr5.2536 Acer truncatum
AUR62001330 Chenopodium quinoa
AUR62010313 Chenopodium quinoa
AUR62025674 Chenopodium quinoa
AUR62039074 Chenopodium quinoa
BcaB03g16051 Brassica carinata
BcaB06g26004 Brassica carinata
BcaC05g28475 Brassica carinata
BcaC08g47442 Brassica carinata
BcaC08g47443 Brassica carinata
BolC5t33284H Brassica oleracea
BolC6t40298H Brassica oleracea
BraA05t21856Z Brassica rapa
BraA05t22096Z Brassica rapa
BraA07t31916Z Brassica rapa
C05p45590 Brassica napus
C06p52810 Brassica napus
C09p65800 Brassica napus
CAN.G1209.37 Capsicum annuum
CAN.G1231.4 Capsicum annuum
CANSAT21G0155 Cannabis sativa
CANSAT25G2676 Cannabis sativa
CARHR072500 Cardamine hirsuta
CARHR094870 Cardamine hirsuta
Carub.0002s2574 Capsella rubella
Carub.0003s1925 Capsella rubella
Ca_14281_v3 Cicer arietinum L.
Ca_24342_v3 Cicer arietinum L.
Cc02_g19280 Coffea canephora
Cc04_g08770 Coffea canephora
CDE02G1158 Ceratophyllum demersum
CDE09G0668 Ceratophyllum demersum
Cfa011994 Carpinus fangiana
Ciclev10028283m.g Citrus clementina
Ciclev10031422m.g Citrus clementina
CiPaw.05G011800 Carya illinoinensis
CiPaw.11G120400 Carya illinoinensis
ClCG02G006340 Citrullus lanatus
ClCG08G010750 Citrullus lanatus
COL.COLO4_31142 Corchorus olitorius
COL.COLO4_32592 Corchorus olitorius
Cpa.g.c34848 Carica papaya
Cpa.g.c41104 Carica papaya
Cpa.g.sc106.92 Carica papaya
Cpa.g.sc176.10 Carica papaya
Cre10.g428400 Chlamydomonas reinhardtii
CsaV3_2G033400 Cucumis sativus L.
CsaV3_7G008150 Cucumis sativus L.
CSS0026549 Camellia sinensis var. sinensis
CSS0037439 Camellia sinensis var. sinensis
CSS0042058 Camellia sinensis var. sinensis
DCAR_001645 Daucus carota
DCAR_024363 Daucus carota
Dinv14559 Davidia involucrata
Dinv15766 Davidia involucrata
Dinv37035 Davidia involucrata
Duzib052G0356 Durio zibethinus
Duzib235G0523 Durio zibethinus
Duzib235G1501 Durio zibethinus
ECA234G3082 Erigeron canadensis
ECA240G1866 Erigeron canadensis
ECA248G2378 Erigeron canadensis
EL10Ac2g03337 Beta vulgaris
EL10Ac6g14155 Beta vulgaris
EL10Ac7g18134 Beta vulgaris
EL10Ac9g22272 Beta vulgaris
Eucgr.F04033 Eucalyptus grandis
Eucgr.G01349 Eucalyptus grandis
Eucgr.H03207 Eucalyptus grandis
FAN04G1822 Fragaria x ananassa
FAN08G2430 Fragaria x ananassa
FAN13G0389 Fragaria x ananassa
FAN13G0807 Fragaria x ananassa
FAN18G1948 Fragaria x ananassa
FAN18G2235 Fragaria x ananassa
FAN20G1218 Fragaria x ananassa
FAN27G1805 Fragaria x ananassa
FvH4_2g05120 Fragaria vesca
FvH4_5g04730 Fragaria vesca
Glyma.01G244300 Glycine max
Glyma.14G091400 Glycine max
Glyma.17G232000 Glycine max
Gohir.A01G008100 Gossypium hirsutum
Gohir.A05G115100 Gossypium hirsutum
Gohir.D01G008200 Gossypium hirsutum
Gohir.D05G115600 Gossypium hirsutum
Gorai.002G009500 Gossypium raimondii
Gorai.009G119600 Gossypium raimondii
GSVIVG01003148001 Vitis vinifera
GSVIVG01029556001 Vitis vinifera
HanXRQChr03g0070301 Helianthus annuus
Haze_09076 Corylus avellana
Haze_10174 Corylus avellana
Hma1.2p1_0517F.1_g170860 Hydrangea macrophylla
Hma1.2p1_0796F.1_g219210 Hydrangea macrophylla
HPP92_011624 Vanilla planifolia
HPP92_015359 Vanilla planifolia
Hund00152 Selenicereus undatus
Hund05671 Selenicereus undatus
Lalb_Chr03g0040511 Lupinus albus
Lalb_Chr05g0210751 Lupinus albus
Lj1A524T17 Lonicera japonica
Lj1A524T18 Lonicera japonica
Lj1C522G9 Lonicera japonica
Lj1g0013380 Lotus japonicus
Lj5g0007063 Lotus japonicus
Lj9A322T58 Lonicera japonica
Lsat_1_v5_gn_9_111301 Lactuca sativa
Lsat_1_v5_gn_9_71340 Lactuca sativa
Manes.06G035900 Manihot esculenta
Manes.06G179501 Manihot esculenta
Manes.07G069900 Manihot esculenta
Manes.08G085300 Manihot esculenta
Mapoly0128s0017 Marchantia polymorpha
MBI13_g31554_MAGBIO Magnolia biondii
MCO09G033 Micromonas commoda
MCO16G325 Micromonas commoda
MD05G1090100 Malus domestica
MD06G1108500 Malus domestica
MD10G1097600 Malus domestica
Medtr5g004910 Medicago truncatula
Medtr5g459340 Medicago truncatula
Medtr7g029385 Medicago truncatula
MELO3C008111.2 Cucumis melo
MELO3C018491.2 Cucumis melo
Migut.D01666 Erythranthe guttata
Migut.G01111 Erythranthe guttata
Migut.G01147 Erythranthe guttata
Migut.N01165 Erythranthe guttata
MSTRG.22147 Avicennia marina
MSTRG.5340 Avicennia marina
Nitab4.5_0000170g0190 Nicotiana tabacum
Nitab4.5_0000807g0120 Nicotiana tabacum
Nitab4.5_0002815g0030 Nicotiana tabacum
Nitab4.5_0004965g0030 Nicotiana tabacum
Nn1g03800 Nelumbo nucifera
Nn1g09897 Nelumbo nucifera
Nn5g30426 Nelumbo nucifera
Nn6g32427 Nelumbo nucifera
Nn8g41019 Nelumbo nucifera
Oeu013752.1 Olea europaea
Oeu020149.1 Olea europaea
Os08g0520100 Oryza sativa ssp. japonica
Os09g0103500 Oryza sativa ssp. japonica
Peaxi162Scf00016g02336 Petunia axillaris
Peaxi162Scf00474g00212 Petunia axillaris
PGR042G3513 Punica granatum
PGR102G2960 Punica granatum
PGSC0003DMG400013566 Solanum tuberosum
PGSC0003DMG400025766 Solanum tuberosum
Phvul.001G032500 Phaseolus vulgaris
Phvul.002G053600 Phaseolus vulgaris
Potri.004G228200 Populus trichocarpa
Potri.009G095700 Populus trichocarpa
Pp3c1_9440 Physcomitrium patens
PRCOL_00000011 Prasinoderma coloniale
Prupe.5G121100 Prunus persica
Prupe.8G135400 Prunus persica
Psat1g094560 Pisum sativum
Psat4g228440 Pisum sativum
PSO541G3889 Papaver somniferum
PSO675G2832 Papaver somniferum
QL01p051174 Quercus lobata
QL02p030245 Quercus lobata
QL11p033595 Quercus lobata
RcHm_v2.0_Chr1g0363621 Rosa chinensis
RcHm_v2.0_Chr6g0247011 Rosa chinensis
RcHm_v2.0_Chr6g0255041 Rosa chinensis
RcHm_v2.0_Chr6g0299231 Rosa chinensis
RcHm_v2.0_Chr7g0194671 Rosa chinensis
RcHm_v2.0_Chr7g0224431 Rosa chinensis
Rhsim05G0088600 Rhododendron simsii
Sabra01G0173100 Salix brachista
Sabra09G0073500 Salix brachista
SalBow3G2987 Salvia bowleyana
SalBow5G4265 Salvia bowleyana
Sc08g0001370 Simmondsia chinensis
Sc15g0001140 Simmondsia chinensis
Sed0006233 Sechium edule
Sed0018704 Sechium edule
SEGI_10014 Sequoiadendron giganteum
SEGI_13958 Sequoiadendron giganteum
SGA_v2.0_scaffold28G11930 Striga asiatica
SGA_v2.0_scaffold36G14391 Striga asiatica
SGA_v2.0_scaffold393G50711 Striga asiatica
SHI05285 Sapria himalayana
SMO271G0040 Selaginella moellendorffii
Solyc01g107580.4 Solanum lycopersicum
Solyc07g042750.4 Solanum lycopersicum
Sopen01g049770 Solanum pennellii
Sopen07g022400 Solanum pennellii
Sopen09g023680 Solanum pennellii
Sp3g17500 Schrenkiella parvula
Sp5g33930 Schrenkiella parvula
TAR383G0889 Trochodendron aralioides
TAR571G0004 Trochodendron aralioides
TAR625G1524 Trochodendron aralioides
TAR628G0444 Trochodendron aralioides
THA.LOC104812907 Tarenaya hassleriana
THA.LOC104813628 Tarenaya hassleriana
Thecc.02G108300 Theobroma cacao
Thecc.06G055800 Theobroma cacao
Thhalv10018480m.g Eutrema salsugineum
Thhalv10020633m.g Eutrema salsugineum
TPR.G21601 Trifolium pratense
TPR.G22316 Trifolium pratense
TWI18G1132 Tripterygium wilfordii
TWI79G1558 Tripterygium wilfordii
unitig_8.g5007 Utricularia gibba
unitig_8.g5008 Utricularia gibba
unitig_94.g28320 Utricularia gibba
vmacro06459 Vaccinium macrocarpon
vmacro19451 Vaccinium macrocarpon
VMungo0647G1213 Vigna mungo
VMungo1080G0644 Vigna mungo
VMungo1215G2117 Vigna mungo
Zm00001eb174620 Zea mays
Zm00001eb307420 Zea mays

User provided reference genes

Program Settings