Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p03100 Brassica napus
A10p15840 Brassica napus
A10p28900 Brassica napus
Aa31LG11G220 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3497 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2417 Anthoceros agrestis
Actinidia00656 Actinidia chinensis
Actinidia00975 Actinidia chinensis
Actinidia07810 Actinidia chinensis
Actinidia29729 Actinidia chinensis
Actinidia32609 Actinidia chinensis
Actinidia33899 Actinidia chinensis
Ah.08g215100 Amaranthus hybridus
Ah.10g036130 Amaranthus hybridus
Ah.15g096040 Amaranthus hybridus
Ah.16g103980 Amaranthus hybridus
AL6G17300 Arabidopsis lyrata
AL7G45830 Arabidopsis lyrata
AL8G34630 Arabidopsis lyrata
Aqoxy2G00776 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.03UWN9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H260BT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NSZL7L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QAL2SW Arachis hypogaea
AT5G07120 Arabidopsis thaliana
AT5G37050 Arabidopsis thaliana
AT5G58440 Arabidopsis thaliana
ATR0594G055 Amborella trichopoda
Atru.chr3.4117 Acer truncatum
AUR62001869 Chenopodium quinoa
AUR62009667 Chenopodium quinoa
AUR62012315 Chenopodium quinoa
AUR62022955 Chenopodium quinoa
BcaB01g06033 Brassica carinata
BcaB08g36178 Brassica carinata
BcaC04g19868 Brassica carinata
BolC3t12891H Brassica oleracea
BolC9t57887H Brassica oleracea
BolC9t59669H Brassica oleracea
BraA03t09667Z Brassica rapa
BraA10t43641Z Brassica rapa
BraA10t44937Z Brassica rapa
C03p03490 Brassica napus
C09p50310 Brassica napus
C09p69250 Brassica napus
CAN.G1413.2 Capsicum annuum
CAN.G3.31 Capsicum annuum
CANSAT54G2694 Cannabis sativa
CARHR206020 Cardamine hirsuta
Carub.0006s0604 Capsella rubella
Carub.0008s1903 Capsella rubella
Ca_05653_v3 Cicer arietinum L.
Ca_06002_v3 Cicer arietinum L.
CBR_g717 Chara braunii
Cc01_g14860 Coffea canephora
Cc02_g05950 Coffea canephora
CDE04G2223 Ceratophyllum demersum
CDE06G1901 Ceratophyllum demersum
CDE06G1946 Ceratophyllum demersum
CDE07G0900 Ceratophyllum demersum
Cfa001262 Carpinus fangiana
Cfa011779 Carpinus fangiana
Cfa021947 Carpinus fangiana
Ciclev10028102m.g Citrus clementina
CiPaw.01G302000 Carya illinoinensis
CiPaw.13G069000 Carya illinoinensis
ClCG03G000420 Citrullus lanatus
ClCG07G004660 Citrullus lanatus
COL.COLO4_11155 Corchorus olitorius
Cpa.g.sc2.354 Carica papaya
Cre02.g095102 Chlamydomonas reinhardtii
Cre07.g326450 Chlamydomonas reinhardtii
Cre10.g462300 Chlamydomonas reinhardtii
CsaV3_1G036500 Cucumis sativus L.
CsaV3_5G010610 Cucumis sativus L.
CSS0013446 Camellia sinensis var. sinensis
CSS0038883 Camellia sinensis var. sinensis
DCAR_012270 Daucus carota
Dinv09671 Davidia involucrata
Dinv10577 Davidia involucrata
Dinv21791 Davidia involucrata
Dinv28697 Davidia involucrata
Duzib150G0315 Durio zibethinus
Duzib168G0586 Durio zibethinus
ECA233G5795 Erigeron canadensis
ECA236G4991 Erigeron canadensis
ECA238G4545 Erigeron canadensis
EL10Ac2g04906 Beta vulgaris
EL10Ac5g10795 Beta vulgaris
EL10Ac7g15922 Beta vulgaris
Eucgr.B04005 Eucalyptus grandis
FAN01G2980 Fragaria x ananassa
FAN03G1742 Fragaria x ananassa
FAN06G0052 Fragaria x ananassa
FAN11G2249 Fragaria x ananassa
FAN16G3444 Fragaria x ananassa
FAN21G3230 Fragaria x ananassa
FAN25G3323 Fragaria x ananassa
FvH4_3g39770 Fragaria vesca
FvH4_7g25340 Fragaria vesca
Glyma.02G231800 Glycine max
Glyma.02G261500 Glycine max
Glyma.14G056000 Glycine max
Glyma.14G199000 Glycine max
Gohir.A03G025400 Gossypium hirsutum
Gohir.D03G143100 Gossypium hirsutum
Gorai.003G150300 Gossypium raimondii
GSVIVG01024632001 Vitis vinifera
GSVIVG01032741001 Vitis vinifera
HanXRQChr05g0130481 Helianthus annuus
HanXRQChr08g0222601 Helianthus annuus
HanXRQChr14g0458761 Helianthus annuus
Haze_17290 Corylus avellana
Haze_24412 Corylus avellana
Hma1.2p1_1380F.1_g279290 Hydrangea macrophylla
Hma1.2p1_1692F.1_g297920 Hydrangea macrophylla
HPP92_012005 Vanilla planifolia
HPP92_012014 Vanilla planifolia
HPP92_017929 Vanilla planifolia
Hund05053 Selenicereus undatus
Hund15874 Selenicereus undatus
Lalb_Chr10g0103571 Lupinus albus
Lalb_Chr17g0345391 Lupinus albus
Lalb_Chr17g0346931 Lupinus albus
Lj1A126G22 Lonicera japonica
Lj8A60T49 Lonicera japonica
LjContig00141g0002850 Lotus japonicus
LjContig00357g0027519 Lotus japonicus
Lsat_1_v5_gn_0_45981 Lactuca sativa
Lsat_1_v5_gn_1_78060 Lactuca sativa
Lsat_1_v5_gn_2_125620 Lactuca sativa
Lsat_1_v5_gn_3_9081 Lactuca sativa
Lsat_1_v5_gn_8_13180 Lactuca sativa
Manes.02G217300 Manihot esculenta
Manes.18G145569 Manihot esculenta
Mapoly0027s0118 Marchantia polymorpha
MCO03G345 Micromonas commoda
MD01G1159500 Malus domestica
MD03G1056600 Malus domestica
MD07G1228000 Malus domestica
MD11G1058400 Malus domestica
Medtr5g073280 Medicago truncatula
Medtr5g083370 Medicago truncatula
Medtr5g083395 Medicago truncatula
MELO3C020090.2 Cucumis melo
MELO3C020518.2 Cucumis melo
Migut.F01466 Erythranthe guttata
Migut.N00758 Erythranthe guttata
MSTRG.12689 Avicennia marina
MSTRG.17893 Avicennia marina
MSTRG.27299 Avicennia marina
Nitab4.5_0000002g0170 Nicotiana tabacum
Nitab4.5_0004167g0010 Nicotiana tabacum
Nitab4.5_0006959g0010 Nicotiana tabacum
Nn2g11011 Nelumbo nucifera
Nn2g13262 Nelumbo nucifera
Oeu017750.1 Olea europaea
Oeu019272.1 Olea europaea
Oeu023917.1 Olea europaea
Oeu023918.1 Olea europaea
Oeu030318.1 Olea europaea
Oeu064676.1 Olea europaea
Os01g0827200 Oryza sativa ssp. japonica
Os05g0346100 Oryza sativa ssp. japonica
Os05g0474500 Oryza sativa ssp. japonica
Peaxi162Scf00055g00149 Petunia axillaris
Peaxi162Scf00284g00314 Petunia axillaris
PGR102G1098 Punica granatum
PGSC0003DMG400023942 Solanum tuberosum
Phvul.008G220200 Phaseolus vulgaris
Phvul.008G252600 Phaseolus vulgaris
Potri.019G124200 Populus trichocarpa
Pp3c2_34810 Physcomitrium patens
PRCOL_00002433 Prasinoderma coloniale
Prupe.2G257500 Prunus persica
Prupe.6G048200 Prunus persica
Psat2g030040 Pisum sativum
Psat2g054840 Pisum sativum
PSO339G2963 Papaver somniferum
PSO349G0274 Papaver somniferum
PSO765G0145 Papaver somniferum
PSO801G0414 Papaver somniferum
QL01p026215 Quercus lobata
QL08p063961 Quercus lobata
QL93p0181_0033 Quercus lobata
RcHm_v2.0_Chr1g0371251 Rosa chinensis
RcHm_v2.0_Chr5g0071651 Rosa chinensis
Rhsim09G0181100 Rhododendron simsii
Rhsim09G0181300 Rhododendron simsii
Rhsim13G0064000 Rhododendron simsii
Sabra19G0122600 Salix brachista
Sabra19G0131800 Salix brachista
SalBow5G0705 Salvia bowleyana
SalBow5G3856 Salvia bowleyana
Sc10g0002740 Simmondsia chinensis
Sc12g0001950 Simmondsia chinensis
Sed0002725 Sechium edule
Sed0006604 Sechium edule
Sed0017047 Sechium edule
SEGI_02521 Sequoiadendron giganteum
SEGI_10117 Sequoiadendron giganteum
SEGI_14337 Sequoiadendron giganteum
SEGI_18214 Sequoiadendron giganteum
SEGI_26053 Sequoiadendron giganteum
SEGI_31145 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32956 Striga asiatica
SGA_v2.0_scaffold437G51612 Striga asiatica
SMO347G0021 Selaginella moellendorffii
SMO361G0444 Selaginella moellendorffii
Solyc06g050550.4 Solanum lycopersicum
Solyc09g031590.4 Solanum lycopersicum
Solyc09g031600.2 Solanum lycopersicum
Sopen06g016070 Solanum pennellii
Sopen09g013970 Solanum pennellii
Sp6g20130 Schrenkiella parvula
SpUn0354_0020 Schrenkiella parvula
TAR369G0005 Trochodendron aralioides
TAR623G0752 Trochodendron aralioides
TAR633G1702 Trochodendron aralioides
TAR636G3609 Trochodendron aralioides
THA.LOC104799386 Tarenaya hassleriana
Thecc.09G357900 Theobroma cacao
Thhalv10013051m.g Eutrema salsugineum
Thhalv10019628m.g Eutrema salsugineum
TPR.G31793 Trifolium pratense
TPR.G39479 Trifolium pratense
TPR.G8358 Trifolium pratense
TWI31G1122 Tripterygium wilfordii
TWI79G1198 Tripterygium wilfordii
unitig_0.g434 Utricularia gibba
unitig_0.g435 Utricularia gibba
unitig_37.g11919 Utricularia gibba
vmacro02917 Vaccinium macrocarpon
vmacro09995 Vaccinium macrocarpon
VMungo0647G0380 Vigna mungo
VMungo0647G1312 Vigna mungo
VMungo0647G1347 Vigna mungo
VMungo1309G2397 Vigna mungo
Zm00001eb149250 Zea mays
Zm00001eb286350 Zea mays
Zm00001eb290320 Zea mays
Zm00001eb351950 Zea mays
Zm00001eb368590 Zea mays
Zm00001eb368600 Zea mays
Zm00001eb441730 Zea mays
Zm00001eb441750 Zea mays

User provided reference genes

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