Gene: AT5G07120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G07120
  • Transcript Identifier AT5G07120.1
  • Gene Type Coding gene
  • Location Chr5 : 2207065-2209355 : negative

Gene Family Information

  • ID HOM05D002814
  • #Genes/#Species 246/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G07120.1
  • symbol SNX2b
  • uniprot B9DFS6

Descriptions

  • Description sorting nexin 2B
  • Computational description sorting nexin 2B (SNX2b); FUNCTIONS IN: phospholipid binding; INVOLVED IN: vesicle-mediated transport, intracellular signaling pathway; LOCATED IN: membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2A (TAIR:AT5G58440.1); Has 2399 Blast hits to 2386 proteins in 279 species: Archae - 13; Bacteria - 100; Metazoa - 1366; Fungi - 555; Plants - 146; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015031
IEA
GOA Databaseprotein transport
GO:0090351
IGI
Gene Ontologyseedling development1
GO:0051604
IMP
Gene Ontologyprotein maturation1
GO:0032502
IGI
Gene Ontologydevelopmental process1
GO:0045324
IMP
Gene Ontologylate endosome to vacuole transport2
GO:0016192
IMP
Gene Ontologyvesicle-mediated transport2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046982
IPI
Gene Ontologyprotein heterodimerization activity1
GO:0035091
IEA
Gene Ontologyphosphatidylinositol binding
GO:0035091
IEA
InterProphosphatidylinositol binding
GO:0008289
IEA
GOA Databaselipid binding
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005543
IDA
Gene Ontologyphospholipid binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IDA
Gene Ontologymembrane2
GO:0005768
IEA
GOA Databaseendosome
GO:0005737
IEA
GOA Databasecytoplasm
GO:0010008
IEA
GOA Databaseendosome membrane
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005634
ISM
Gene Ontologynucleus
GO:0032585
IDA
Gene Ontologymultivesicular body membrane1
GO:0005829
IDA
Gene Ontologycytosol1
GO:0030904
TAS
Gene Ontologyretromer complex3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001683 Phox homology
IPR015404 Sorting nexin Vps5-like, C-terminal
IPR044279 Sorting nexin 2A/B
IPR036871 PX domain superfamily
IPR027267 AH/BAR domain superfamily
Mapman id Description
22.4.2.3 Vesicle trafficking.endocytic trafficking.Retromer-mediated protein recycling.regulatory factor (SNX2)