Gene: Carub.0008s1903

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0008s1903
  • Transcript Identifier Carub.0008s1903.1
  • Gene Type Coding gene
  • Location scaffold_8 : 9824030-9826547 : negative

Gene Family Information

  • ID HOM05D002814
  • #Genes/#Species 246/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0008s1903.v1.1
  • pacid 39250277
  • synonym Carubv10026130m.g

Descriptions

  • Description PTHR10555//PTHR10555:SF155 - SORTING NEXIN // SUBFAMILY NOT NAMED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT5G58440
GO:0051604
ISO
PLAZA Integrative Orthologyprotein maturation AT5G58440
GO:0032502
ISO
PLAZA Integrative Orthologydevelopmental process AT5G58440

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035091
IEA
InterProphosphatidylinositol binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G58440
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT5G58440

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030904
ISO
PLAZA Integrative Orthologyretromer complex AT5G58440
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G58440
GO:0032585
ISO
PLAZA Integrative Orthologymultivesicular body membrane AT5G58440

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036871 PX domain superfamily
IPR027267 AH/BAR domain superfamily
IPR001683 Phox homology
IPR044279 Sorting nexin 2A/B
IPR015404 Sorting nexin Vps5-like, C-terminal
Mapman id Description
22.4.2.3 Vesicle trafficking.endocytic trafficking.Retromer-mediated protein recycling.regulatory factor (SNX2)