Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p19530 Brassica napus
A03p44370 Brassica napus
Aa31LG4G4920 Aethionema arabicum
Aa31sc124G20 Aethionema arabicum
Aa31sc124G50 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1940 Anthoceros agrestis
Actinidia10791 Actinidia chinensis
Actinidia37651 Actinidia chinensis
Ah.01g001810 Amaranthus hybridus
Ah.11g048710 Amaranthus hybridus
AL2G34590 Arabidopsis lyrata
AL3G42170 Arabidopsis lyrata
Aqoxy1G04107 Aquilegia oxysepala
Aqoxy3G03501 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6EMS5T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J49D5C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S96PJU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V177AF Arachis hypogaea
AT1G74700 Arabidopsis thaliana
AT2G04530 Arabidopsis thaliana
ATR1101G088 Amborella trichopoda
ATR1101G102 Amborella trichopoda
ATR1120G201 Amborella trichopoda
Atru.chr11.1413 Acer truncatum
Atru.chr4.2521 Acer truncatum
Atru.chr5.2134 Acer truncatum
Atru.chr6.3281 Acer truncatum
Atru.chr6.3298 Acer truncatum
Atru.chr7.1830 Acer truncatum
Atru.chr7.801 Acer truncatum
AUR62008367 Chenopodium quinoa
AUR62014155 Chenopodium quinoa
AUR62015103 Chenopodium quinoa
AUR62017565 Chenopodium quinoa
AUR62021732 Chenopodium quinoa
BcaB05g24869 Brassica carinata
BcaB08g34479 Brassica carinata
BcaC01g03197 Brassica carinata
BcaC03g15523 Brassica carinata
BcaNung05962 Brassica carinata
BolC2t09242H Brassica oleracea
BolC3t17773H Brassica oleracea
BraA02t06990Z Brassica rapa
BraA03t13567Z Brassica rapa
C02p32070 Brassica napus
C03p00400 Brassica napus
C03p54980 Brassica napus
CAN.G1550.11 Capsicum annuum
CAN.G1711.11 Capsicum annuum
CANSAT64G1691 Cannabis sativa
CANSAT80G2252 Cannabis sativa
CARHR067990 Cardamine hirsuta
CARHR068000 Cardamine hirsuta
CARHR102420 Cardamine hirsuta
Carub.0002s2149 Capsella rubella
Carub.0003s2616 Capsella rubella
Ca_06045_v3 Cicer arietinum L.
Ca_26279_v3 Cicer arietinum L.
CBR_g37120 Chara braunii
CBR_g49698 Chara braunii
Cc04_g15440 Coffea canephora
Cc07_g19400 Coffea canephora
CDE04G1523 Ceratophyllum demersum
CDE06G1813 Ceratophyllum demersum
Cfa014295 Carpinus fangiana
Cfa018982 Carpinus fangiana
Ciclev10015749m.g Citrus clementina
Ciclev10021490m.g Citrus clementina
Ciclev10026984m.g Citrus clementina
CiPaw.03G274300 Carya illinoinensis
CiPaw.12G016100 Carya illinoinensis
ClCG01G016500 Citrullus lanatus
ClCG07G007010 Citrullus lanatus
ClCG09G020840 Citrullus lanatus
COL.COLO4_05387 Corchorus olitorius
COL.COLO4_05457 Corchorus olitorius
Cpa.g.sc132.51 Carica papaya
Cpa.g.sc17.217 Carica papaya
Cre10.g431400 Chlamydomonas reinhardtii
CsaV3_4G022150 Cucumis sativus L.
CsaV3_6G037860 Cucumis sativus L.
CsaV3_UNG147140 Cucumis sativus L.
CSS0006302 Camellia sinensis var. sinensis
CSS0008312 Camellia sinensis var. sinensis
CSS0020098 Camellia sinensis var. sinensis
DCAR_019735 Daucus carota
DCAR_024740 Daucus carota
Dinv02433 Davidia involucrata
Dinv05856 Davidia involucrata
Dinv09822 Davidia involucrata
Dinv19924 Davidia involucrata
Dinv38672 Davidia involucrata
Duzib133G1044 Durio zibethinus
Duzib138G0682 Durio zibethinus
Duzib205G0186 Durio zibethinus
ECA232G1292 Erigeron canadensis
ECA232G3351 Erigeron canadensis
ECA236G1092 Erigeron canadensis
EL10Ac5g10954 Beta vulgaris
EL10Ac9g22790 Beta vulgaris
Eucgr.K00726 Eucalyptus grandis
Eucgr.K02452 Eucalyptus grandis
FAN02G3344 Fragaria x ananassa
FAN05G2633 Fragaria x ananassa
FAN06G0775 Fragaria x ananassa
FAN06G1353 Fragaria x ananassa
FAN06G3264 Fragaria x ananassa
FAN08G3455 Fragaria x ananassa
FAN09G1069 Fragaria x ananassa
FAN10G0356 Fragaria x ananassa
FAN10G0567 Fragaria x ananassa
FAN13G0086 Fragaria x ananassa
FAN18G2793 Fragaria x ananassa
FvH4_5g15380 Fragaria vesca
FvH4_6g41771 Fragaria vesca
Glyma.02G266200 Glycine max
Glyma.14G051300 Glycine max
Glyma.20G012000 Glycine max
Gohir.A03G065200 Gossypium hirsutum
Gohir.A07G085400 Gossypium hirsutum
Gohir.D03G091500 Gossypium hirsutum
Gohir.D07G090800 Gossypium hirsutum
Gohir.D12G091100 Gossypium hirsutum
Gorai.001G097300 Gossypium raimondii
Gorai.003G094900 Gossypium raimondii
Gorai.008G098600 Gossypium raimondii
GSVIVG01008050001 Vitis vinifera
GSVIVG01030538001 Vitis vinifera
HanXRQChr09g0271091 Helianthus annuus
HanXRQChr16g0508311 Helianthus annuus
Haze_07369 Corylus avellana
Haze_12743 Corylus avellana
Hma1.2p1_0002F.1_g003150 Hydrangea macrophylla
Hma1.2p1_1754F.1_g300920 Hydrangea macrophylla
Hma1.2p1_1754F.1_g300940 Hydrangea macrophylla
HPP92_009119 Vanilla planifolia
HPP92_019688 Vanilla planifolia
Hund08465 Selenicereus undatus
Hund10021 Selenicereus undatus
Hund15299 Selenicereus undatus
Lalb_Chr10g0105491 Lupinus albus
Lalb_Chr17g0338371 Lupinus albus
Lalb_Chr17g0347111 Lupinus albus
Lj2g0008456 Lotus japonicus
Lj5A115T70 Lonicera japonica
Lj9A396G12 Lonicera japonica
Lj9A397G34 Lonicera japonica
Lj9A398T13 Lonicera japonica
LjContig00029g0025311 Lotus japonicus
Lsat_1_v5_gn_4_107600 Lactuca sativa
Lsat_1_v5_gn_7_94680 Lactuca sativa
Manes.13G064700 Manihot esculenta
Manes.14G075500 Manihot esculenta
Mapoly0060s0072 Marchantia polymorpha
MBI16_g42267_MAGBIO Magnolia biondii
MCO09G670 Micromonas commoda
MD06G1188900 Malus domestica
MD09G1117300 Malus domestica
Medtr1g033550 Medicago truncatula
Medtr5g084700 Medicago truncatula
Medtr5g093920 Medicago truncatula
Medtr5g093930 Medicago truncatula
MELO3C014447.2 Cucumis melo
MELO3C020738.2 Cucumis melo
Migut.E00673 Erythranthe guttata
Migut.I00132 Erythranthe guttata
MSTRG.13671 Avicennia marina
MSTRG.23040 Avicennia marina
Nitab4.5_0000785g0180 Nicotiana tabacum
Nitab4.5_0001027g0070 Nicotiana tabacum
Nitab4.5_0001038g0040 Nicotiana tabacum
Nitab4.5_0002662g0090 Nicotiana tabacum
Nitab4.5_0003232g0060 Nicotiana tabacum
Nitab4.5_0004785g0060 Nicotiana tabacum
Nn3g18468 Nelumbo nucifera
Oeu022630.1 Olea europaea
Oeu054519.1 Olea europaea
Os02g0214300 Oryza sativa ssp. japonica
Os09g0482680 Oryza sativa ssp. japonica
Peaxi162Scf00004g00117 Petunia axillaris
Peaxi162Scf00009g00310 Petunia axillaris
PGR004G1677 Punica granatum
PGR044G1323 Punica granatum
PGR119G0955 Punica granatum
PGR142G2998 Punica granatum
PGSC0003DMG400018079 Solanum tuberosum
PGSC0003DMG400023384 Solanum tuberosum
PGSC0003DMG402007635 Solanum tuberosum
Phvul.003G014100 Phaseolus vulgaris
Phvul.008G215900 Phaseolus vulgaris
Potri.014G160600 Populus trichocarpa
Potri.015G064400 Populus trichocarpa
Pp3c18_4740 Physcomitrium patens
Pp3c18_4746 Physcomitrium patens
Pp3c19_22930 Physcomitrium patens
PRCOL_00004849 Prasinoderma coloniale
Prupe.3G206500 Prunus persica
Prupe.5G187500 Prunus persica
Psat2g027160 Pisum sativum
Psat6g095480 Pisum sativum
PSO017G4931 Papaver somniferum
PSO210G2424 Papaver somniferum
PSO302G0113 Papaver somniferum
PSO478G2652 Papaver somniferum
QL08p029694 Quercus lobata
QL10p005068 Quercus lobata
QL10p015748 Quercus lobata
RcHm_v2.0_Chr2g0157561 Rosa chinensis
RcHm_v2.0_Chr7g0180691 Rosa chinensis
Rhsim04G0046500 Rhododendron simsii
Rhsim08G0159100 Rhododendron simsii
Sabra14G0122300 Salix brachista
Sabra15G0090200 Salix brachista
SalBow2G1006 Salvia bowleyana
SalBow5G0566 Salvia bowleyana
SalBow6G4218 Salvia bowleyana
Sc10g0009980 Simmondsia chinensis
Sc20g0004030 Simmondsia chinensis
Sed0005623 Sechium edule
Sed0005746 Sechium edule
SEGI_25887 Sequoiadendron giganteum
SGA_v2.0_scaffold25G10907 Striga asiatica
SGA_v2.0_scaffold65G22205 Striga asiatica
SMO351G0116 Selaginella moellendorffii
Solyc03g113140.3 Solanum lycopersicum
Solyc05g055350.3 Solanum lycopersicum
Sopen03g032200 Solanum pennellii
Sopen05g033800 Solanum pennellii
Sp3g23310 Schrenkiella parvula
Sp5g29820 Schrenkiella parvula
TAR371G0659 Trochodendron aralioides
TAR629G1803 Trochodendron aralioides
THA.LOC104808329 Tarenaya hassleriana
Thecc.01G187500 Theobroma cacao
Thecc.07G054300 Theobroma cacao
Thhalv10002590m.g Eutrema salsugineum
Thhalv10018981m.g Eutrema salsugineum
TPR.G28233 Trifolium pratense
TPR.G30397 Trifolium pratense
TPR.G7190 Trifolium pratense
TWI36G0008 Tripterygium wilfordii
TWI60G0029 Tripterygium wilfordii
unitig_26.g8782 Utricularia gibba
unitig_699.g19639 Utricularia gibba
vmacro09374 Vaccinium macrocarpon
vmacro17513 Vaccinium macrocarpon
VMungo0647G2289 Vigna mungo
VMungo1215G1730 Vigna mungo
Zm00001eb107570 Zea mays
Zm00001eb140780 Zea mays
Zm00001eb172760 Zea mays
Zm00001eb203810 Zea mays
Zm00001eb214590 Zea mays
Zm00001eb288810 Zea mays
Zm00001eb316420 Zea mays
Zm00001eb357480 Zea mays

User provided reference genes

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