Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p23000 Brassica napus
A06p12150 Brassica napus
A07p44620 Brassica napus
A09p60970 Brassica napus
Aa31LG4G1380 Aethionema arabicum
Aa31LG7G760 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.44 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.741 Anthoceros agrestis
Actinidia00115 Actinidia chinensis
Actinidia10754 Actinidia chinensis
Ah.04g150260 Amaranthus hybridus
Ah.04g150370 Amaranthus hybridus
Ah.06g182130 Amaranthus hybridus
AL1G28350 Arabidopsis lyrata
AL1G28360 Arabidopsis lyrata
AL2G40260 Arabidopsis lyrata
Aqoxy1G01018 Aquilegia oxysepala
Aqoxy2G01531 Aquilegia oxysepala
Aqoxy3G01918 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.327P4X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.496WES Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.59G793 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.67FSB3 Arachis hypogaea
AT1G16225 Arabidopsis thaliana
AT1G16230 Arabidopsis thaliana
AT1G16240 Arabidopsis thaliana
AT1G79590 Arabidopsis thaliana
ATR1149G013 Amborella trichopoda
ATR1149G132 Amborella trichopoda
Atru.chr2.3538 Acer truncatum
Atru.chr2.3557 Acer truncatum
Atru.chr2.3558 Acer truncatum
AUR62015900 Chenopodium quinoa
AUR62018432 Chenopodium quinoa
AUR62020322 Chenopodium quinoa
AUR62021001 Chenopodium quinoa
BcaB02g06602 Brassica carinata
BcaB03g14500 Brassica carinata
BcaB05g25208 Brassica carinata
BcaC03g15912 Brassica carinata
BcaC05g25593 Brassica carinata
BcaC08g47519 Brassica carinata
BolC2t09678H Brassica oleracea
BolC5t30166H Brassica oleracea
BolC6t40361H Brassica oleracea
BolC8t52003H Brassica oleracea
BraA02t07297Z Brassica rapa
BraA06t24384Z Brassica rapa
BraA07t31971Z Brassica rapa
BraA09t41470Z Brassica rapa
C02p36760 Brassica napus
C05p14390 Brassica napus
C06p53460 Brassica napus
C08p44580 Brassica napus
CAN.G128.98 Capsicum annuum
CAN.G337.49 Capsicum annuum
CAN.G654.4 Capsicum annuum
CANSAT21G1249 Cannabis sativa
CANSAT25G0829 Cannabis sativa
CARHR016700 Cardamine hirsuta
CARHR016710 Cardamine hirsuta
CARHR073320 Cardamine hirsuta
Carub.0001s1598 Capsella rubella
Carub.0002s2647 Capsella rubella
Ca_06352_v3 Cicer arietinum L.
Ca_14769_v3 Cicer arietinum L.
CBR_g28087 Chara braunii
CBR_g90925 Chara braunii
Cc05_g14390 Coffea canephora
CDE02G1066 Ceratophyllum demersum
CDE09G0058 Ceratophyllum demersum
Cfa020270 Carpinus fangiana
Cfa025695 Carpinus fangiana
Cfa025837 Carpinus fangiana
Ciclev10009364m.g Citrus clementina
CiPaw.09G202300 Carya illinoinensis
CiPaw.11G195300 Carya illinoinensis
CiPaw.11G195400 Carya illinoinensis
CiPaw.12G134100 Carya illinoinensis
ClCG09G011110 Citrullus lanatus
ClCG10G004910 Citrullus lanatus
COL.COLO4_09747 Corchorus olitorius
Cpa.g.sc12.242 Carica papaya
Cpa.g.sc26.138 Carica papaya
Cre17.g709350 Chlamydomonas reinhardtii
CsaV3_3G004560 Cucumis sativus L.
CsaV3_7G021020 Cucumis sativus L.
CSS0015414 Camellia sinensis var. sinensis
CSS0025854 Camellia sinensis var. sinensis
DCAR_017102 Daucus carota
Dinv01779 Davidia involucrata
Dinv22223 Davidia involucrata
Duzib213G0069 Durio zibethinus
Duzib268G1221 Durio zibethinus
ECA240G2676 Erigeron canadensis
ECA246G3655 Erigeron canadensis
EL10Ac3g07335 Beta vulgaris
EL10Ac4g07676 Beta vulgaris
Eucgr.F00647 Eucalyptus grandis
Eucgr.F03509 Eucalyptus grandis
FAN16G0152 Fragaria x ananassa
FAN16G1895 Fragaria x ananassa
FAN16G2229 Fragaria x ananassa
FAN21G3427 Fragaria x ananassa
FAN25G1971 Fragaria x ananassa
FvH4_3g23630 Fragaria vesca
Glyma.08G322600 Glycine max
Glyma.14G017700 Glycine max
Glyma.18G089600 Glycine max
Gohir.A01G085200 Gossypium hirsutum
Gohir.A04G011300 Gossypium hirsutum
Gohir.A08G024500 Gossypium hirsutum
Gohir.A13G135800 Gossypium hirsutum
Gohir.D01G071500 Gossypium hirsutum
Gohir.D05G376900 Gossypium hirsutum
Gohir.D08G035000 Gossypium hirsutum
Gohir.D13G140200 Gossypium hirsutum
Gorai.002G094300 Gossypium raimondii
Gorai.004G032900 Gossypium raimondii
Gorai.009G444600 Gossypium raimondii
Gorai.013G156800 Gossypium raimondii
GSVIVG01002017001 Vitis vinifera
GSVIVG01004129001 Vitis vinifera
GSVIVG01005339001 Vitis vinifera
GSVIVG01037735001 Vitis vinifera
HanXRQChr03g0076891 Helianthus annuus
HanXRQChr05g0159701 Helianthus annuus
HanXRQChr06g0172811 Helianthus annuus
HanXRQChr11g0329561 Helianthus annuus
HanXRQChr13g0408061 Helianthus annuus
HanXRQChr15g0472121 Helianthus annuus
HanXRQChr16g0500811 Helianthus annuus
Haze_09752 Corylus avellana
Hma1.2p1_1199F.1_g266323 Hydrangea macrophylla
Hma1.2p1_3177F.1_g333650 Hydrangea macrophylla
HPP92_024443 Vanilla planifolia
Hund19063 Selenicereus undatus
Hund23193 Selenicereus undatus
Lalb_Chr00c48g0412911 Lupinus albus
Lalb_Chr00c48g0413021 Lupinus albus
Lalb_Chr04g0248111 Lupinus albus
Lalb_Chr15g0081781 Lupinus albus
Lalb_Chr20g0115771 Lupinus albus
Lalb_Chr20g0115781 Lupinus albus
Lalb_Chr20g0116121 Lupinus albus
Lj1C881G8 Lonicera japonica
Lj6g0016595 Lotus japonicus
Lj8C173G9 Lonicera japonica
LjContig00272g0021698 Lotus japonicus
Lsat_1_v5_gn_5_2800 Lactuca sativa
Lsat_1_v5_gn_9_90800 Lactuca sativa
Manes.03G135600 Manihot esculenta
Manes.09G081612 Manihot esculenta
Manes.11G083047 Manihot esculenta
Manes.15G065600 Manihot esculenta
Manes.16G049052 Manihot esculenta
Manes.18G146401 Manihot esculenta
Mapoly0004s0228 Marchantia polymorpha
MBI10_g21033_MAGBIO Magnolia biondii
MBI10_g21034_MAGBIO Magnolia biondii
MCO13G523 Micromonas commoda
MD03G1192400 Malus domestica
MD05G1116000 Malus domestica
MD11G1208900 Malus domestica
MD12G1111800 Malus domestica
Medtr3g055200 Medicago truncatula
Medtr5g094010 Medicago truncatula
Medtr8g031190 Medicago truncatula
MELO3C013123.2 Cucumis melo
MELO3C014154.2 Cucumis melo
Migut.H01788 Erythranthe guttata
Migut.M01702 Erythranthe guttata
MSTRG.13002 Avicennia marina
MSTRG.6965 Avicennia marina
Nitab4.5_0000062g0310 Nicotiana tabacum
Nitab4.5_0001160g0040 Nicotiana tabacum
Nitab4.5_0002051g0080 Nicotiana tabacum
Nitab4.5_0003286g0030 Nicotiana tabacum
Nitab4.5_0003869g0080 Nicotiana tabacum
Nitab4.5_0005965g0010 Nicotiana tabacum
Nn1g08618 Nelumbo nucifera
Nn5g28068 Nelumbo nucifera
Oeu005514.1 Olea europaea
Oeu005984.1 Olea europaea
Oeu013110.1 Olea europaea
Oeu054313.1 Olea europaea
Os02g0119400 Oryza sativa ssp. japonica
Os08g0277900 Oryza sativa ssp. japonica
Peaxi162Scf00235g00833 Petunia axillaris
Peaxi162Scf00607g00058 Petunia axillaris
Peaxi162Scf01165g00216 Petunia axillaris
PGR083G1567 Punica granatum
PGSC0003DMG400012856 Solanum tuberosum
PGSC0003DMG400022297 Solanum tuberosum
PGSC0003DMG400028105 Solanum tuberosum
Phvul.006G048900 Phaseolus vulgaris
Phvul.008G273200 Phaseolus vulgaris
Potri.006G032800 Populus trichocarpa
Potri.006G032900 Populus trichocarpa
Potri.016G030100 Populus trichocarpa
Potri.016G030200 Populus trichocarpa
Pp3c11_4820 Physcomitrium patens
Pp3c7_22590 Physcomitrium patens
PRCOL_00000207 Prasinoderma coloniale
Prupe.4G224800 Prunus persica
Prupe.7G022100 Prunus persica
Psat5g175720 Pisum sativum
PSO063G2176 Papaver somniferum
PSO339G0941 Papaver somniferum
PSO339G1564 Papaver somniferum
PSO801G0516 Papaver somniferum
QL07p010213 Quercus lobata
QL07p014213 Quercus lobata
QL08p007888 Quercus lobata
RcHm_v2.0_Chr5g0041671 Rosa chinensis
Rhsim04G0016200 Rhododendron simsii
Rhsim06G0224200 Rhododendron simsii
Sabra06G0021800 Salix brachista
Sc03g0008270 Simmondsia chinensis
Sc07g0002860 Simmondsia chinensis
Sed0002435 Sechium edule
Sed0019395 Sechium edule
SEGI_05113 Sequoiadendron giganteum
SGA_v2.0_scaffold478G52217 Striga asiatica
SGA_v2.0_scaffold8G04387 Striga asiatica
SGA_v2.0_scaffold97G29136 Striga asiatica
SGA_v2.0_scaffold97G29138 Striga asiatica
SHI12128 Sapria himalayana
SHI12129 Sapria himalayana
SMO116G0492 Selaginella moellendorffii
Solyc07g065030.3 Solanum lycopersicum
Solyc10g081060.2 Solanum lycopersicum
Solyc12g014550.1 Solanum lycopersicum
Sopen07g033240 Solanum pennellii
Sopen10g031580 Solanum pennellii
Sp1g14450 Schrenkiella parvula
Sp5g34650 Schrenkiella parvula
TAR369G0946 Trochodendron aralioides
TAR627G0774 Trochodendron aralioides
TAR636G3103 Trochodendron aralioides
THA.LOC104808157 Tarenaya hassleriana
THA.LOC104812405 Tarenaya hassleriana
Thecc.07G026000 Theobroma cacao
Thhalv10008662m.g Eutrema salsugineum
Thhalv10015786m.g Eutrema salsugineum
Thhalv10019084m.g Eutrema salsugineum
Thhalv10021502m.g Eutrema salsugineum
TPR.G18650 Trifolium pratense
TPR.G30646 Trifolium pratense
TPR.G32228 Trifolium pratense
TWI38G0583 Tripterygium wilfordii
TWI39G0254 Tripterygium wilfordii
TWI53G2021 Tripterygium wilfordii
unitig_44.g31551 Utricularia gibba
unitig_578.g16291 Utricularia gibba
unitig_8.g4787 Utricularia gibba
vmacro09685 Vaccinium macrocarpon
vmacro22995 Vaccinium macrocarpon
VMungo0464G1101 Vigna mungo
VMungo0647G1090 Vigna mungo
Zm00001eb069200 Zea mays
Zm00001eb177630 Zea mays

User provided reference genes

Program Settings