Gene: AT1G79590

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G79590
  • Transcript Identifier AT1G79590.2
  • Gene Type Coding gene
  • Location Chr1 : 29947064-29948304 : positive

Gene Family Information

  • ID HOM05D002614
  • #Genes/#Species 262/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G79590.2
  • symbol SYP52
  • Alias ATSYP52
  • uniprot Q94KK7

Descriptions

  • Description syntaxin of plants 52
  • Computational description syntaxin of plants 52 (SYP52); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description syntaxin of plants 52 (SYP52); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006906
IBA
Gene Ontologyvesicle fusion1
GO:0048278
IBA
Gene Ontologyvesicle docking1
GO:0006886
IBA
IEA
Gene Ontologyintracellular protein transport1
GO:0016192
TAS
Gene Ontologyvesicle-mediated transport2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000149
IBA
Gene OntologySNARE binding1
GO:0005484
IBA
TAS, IEA
Gene OntologySNAP receptor activity1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IBA
Gene Ontologyintegral component of membrane1
GO:0016020
IEA
GOA Databasemembrane
GO:0005773
IDA
GOA Databasevacuole
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
ISM
Gene OntologyGolgi apparatus
GO:0031201
IBA
Gene OntologySNARE complex1
GO:0012505
IBA
Gene Ontologyendomembrane system1
GO:0000325
HDA
Gene Ontologyplant-type vacuole3
GO:0010008
TAS, NAS
Gene Ontologyendosome membrane2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000727 Target SNARE coiled-coil homology domain
Mapman id Description
22.3.5.1.4.1 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.Qc-type SNARE components.SYP5-group component