Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p05860 Brassica napus
A05p29510 Brassica napus
A05p29580 Brassica napus
A06p19800 Brassica napus
A06p21520 Brassica napus
A09p48580 Brassica napus
Aa31LG10G10600 Aethionema arabicum
Aa31LG10G9220 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.927 Anthoceros agrestis
Actinidia02916 Actinidia chinensis
Actinidia02917 Actinidia chinensis
AL5G34820 Arabidopsis lyrata
AL5G36770 Arabidopsis lyrata
Aqoxy2G02343 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2H5V0G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7X608M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CLQJ9M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VY93JW Arachis hypogaea
AT3G53830 Arabidopsis thaliana
AT3G55580 Arabidopsis thaliana
ATR0559G246 Amborella trichopoda
ATR0680G187 Amborella trichopoda
Atru.chr12.358 Acer truncatum
Atru.chr12.374 Acer truncatum
Atru.chr6.1468 Acer truncatum
Atru.chr8.2043 Acer truncatum
AUR62012141 Chenopodium quinoa
AUR62040694 Chenopodium quinoa
BcaB01g00077 Brassica carinata
BcaB02g08505 Brassica carinata
BcaC02g09126 Brassica carinata
BcaC03g15834 Brassica carinata
BcaC04g19075 Brassica carinata
BcaC07g39887 Brassica carinata
BolC1t03839H Brassica oleracea
BolC4t22563H Brassica oleracea
BolC4t22564H Brassica oleracea
BolC4t25448H Brassica oleracea
BolC8t48783H Brassica oleracea
BolC8t48784H Brassica oleracea
BolC8t50715H Brassica oleracea
BolC9t59162H Brassica oleracea
BraA04t16283Z Brassica rapa
BraA06t25060Z Brassica rapa
BraA06t25238Z Brassica rapa
BraA09t40310Z Brassica rapa
C01p38850 Brassica napus
C04p09570 Brassica napus
C04p38710 Brassica napus
C07p54010 Brassica napus
C08p30900 Brassica napus
C09p63260 Brassica napus
CAN.G1184.6 Capsicum annuum
CAN.G554.2 Capsicum annuum
CANSAT35G1961 Cannabis sativa
CANSAT56G3970 Cannabis sativa
CARHR163760 Cardamine hirsuta
CARHR165630 Cardamine hirsuta
Carub.0005s2042 Capsella rubella
Carub.0005s2232 Capsella rubella
Ca_08193_v3 Cicer arietinum L.
Ca_21984_v3 Cicer arietinum L.
Cc02_g07390 Coffea canephora
Cc06_g02260 Coffea canephora
CDE02G3811 Ceratophyllum demersum
Cfa001422 Carpinus fangiana
Cfa017332 Carpinus fangiana
Ciclev10012109m.g Citrus clementina
Ciclev10031165m.g Citrus clementina
CiPaw.01G291800 Carya illinoinensis
CiPaw.02G186800 Carya illinoinensis
CiPaw.09G197700 Carya illinoinensis
ClCG04G007940 Citrullus lanatus
ClCG07G003610 Citrullus lanatus
COL.COLO4_14746 Corchorus olitorius
COL.COLO4_25501 Corchorus olitorius
Cpa.g.sc169.4 Carica papaya
Cpa.g.sc19.267 Carica papaya
CsaV3_4G025250 Cucumis sativus L.
CsaV3_5G008410 Cucumis sativus L.
CSS0014151 Camellia sinensis var. sinensis
CSS0047618 Camellia sinensis var. sinensis
CSS0050136 Camellia sinensis var. sinensis
DCAR_011738 Daucus carota
Dinv16257 Davidia involucrata
Dinv34474 Davidia involucrata
Duzib093G1311 Durio zibethinus
Duzib114G0108 Durio zibethinus
Duzib128G0781 Durio zibethinus
EL10Ac2g04696 Beta vulgaris
Eucgr.J01225 Eucalyptus grandis
Eucgr.K03062 Eucalyptus grandis
FAN01G1023 Fragaria x ananassa
FAN01G1728 Fragaria x ananassa
FAN02G0236 Fragaria x ananassa
FAN03G2163 Fragaria x ananassa
FAN05G3193 Fragaria x ananassa
FAN06G2400 Fragaria x ananassa
FAN06G3741 Fragaria x ananassa
FAN09G3997 Fragaria x ananassa
FAN10G3296 Fragaria x ananassa
FAN14G4375 Fragaria x ananassa
FvH4_6g13080 Fragaria vesca
FvH4_7g23150 Fragaria vesca
Glyma.02G250700 Glycine max
Glyma.07G136500 Glycine max
Glyma.11G223000 Glycine max
Glyma.14G066000 Glycine max
Glyma.18G034600 Glycine max
Glyma.18G187100 Glycine max
Gohir.A05G347700 Gossypium hirsutum
Gohir.A06G101404 Gossypium hirsutum
Gohir.A10G222800 Gossypium hirsutum
Gohir.D04G064700 Gossypium hirsutum
Gohir.D10G235100 Gossypium hirsutum
Gorai.011G268700 Gossypium raimondii
Gorai.012G072600 Gossypium raimondii
GSVIVG01016476001 Vitis vinifera
GSVIVG01034111001 Vitis vinifera
HanXRQChr01g0007821 Helianthus annuus
HanXRQChr07g0201681 Helianthus annuus
HanXRQChr08g0219581 Helianthus annuus
HanXRQChr10g0312681 Helianthus annuus
HanXRQChr10g0312721 Helianthus annuus
HanXRQChr16g0528501 Helianthus annuus
Haze_17123 Corylus avellana
Haze_20844 Corylus avellana
Hma1.2p1_0039F.1_g024600 Hydrangea macrophylla
Hma1.2p1_0150F.1_g066590 Hydrangea macrophylla
Hma1.2p1_0278F.1_g111900 Hydrangea macrophylla
Hma1.2p1_0278F.1_g111905 Hydrangea macrophylla
Hma1.2p1_0766F.1_g215210 Hydrangea macrophylla
Hma1.2p1_1087F.1_g255510 Hydrangea macrophylla
HPP92_019234 Vanilla planifolia
Hund13797 Selenicereus undatus
Lalb_Chr04g0250991 Lupinus albus
Lalb_Chr15g0084521 Lupinus albus
Lalb_Chr19g0125181 Lupinus albus
Lalb_Chr19g0125191 Lupinus albus
Lj1A943G42 Lonicera japonica
Lj6g0000687 Lotus japonicus
Lsat_1_v5_gn_2_118081 Lactuca sativa
Lsat_1_v5_gn_2_32301 Lactuca sativa
Manes.07G119800 Manihot esculenta
Manes.08G080400 Manihot esculenta
Manes.09G095600 Manihot esculenta
Manes.10G025500 Manihot esculenta
Mapoly0123s0009 Marchantia polymorpha
MBI05_g35176_MAGBIO Magnolia biondii
MBI14_g32126_MAGBIO Magnolia biondii
MCO04G015 Micromonas commoda
MD01G1139700 Malus domestica
MD04G1135400 Malus domestica
MD04G1135500 Malus domestica
MD07G1204100 Malus domestica
MD12G1149100 Malus domestica
MD12G1149200 Malus domestica
Medtr3g069030 Medicago truncatula
Medtr7g063440 Medicago truncatula
MELO3C003150.2 Cucumis melo
MELO3C023889.2 Cucumis melo
Migut.F01276 Erythranthe guttata
Migut.L01965 Erythranthe guttata
Migut.O00888 Erythranthe guttata
MSTRG.26783 Avicennia marina
MSTRG.8276 Avicennia marina
Nitab4.5_0000647g0190 Nicotiana tabacum
Nitab4.5_0000722g0020 Nicotiana tabacum
Nitab4.5_0006999g0030 Nicotiana tabacum
Nitab4.5_0007140g0010 Nicotiana tabacum
Nn2g11237 Nelumbo nucifera
Nn2g13479 Nelumbo nucifera
Nn2g13480 Nelumbo nucifera
Oeu001516.1 Olea europaea
Oeu007804.1 Olea europaea
Oeu013144.1 Olea europaea
Oeu031361.1 Olea europaea
Os01g0846800 Oryza sativa ssp. japonica
Os05g0456925 Oryza sativa ssp. japonica
Peaxi162Scf00164g01414 Petunia axillaris
Peaxi162Scf00584g00112 Petunia axillaris
Peaxi162Scf00658g00426 Petunia axillaris
PGR004G2112 Punica granatum
PGR044G1381 Punica granatum
PGSC0003DMG400008894 Solanum tuberosum
PGSC0003DMG400027194 Solanum tuberosum
Phvul.001G236500 Phaseolus vulgaris
Phvul.008G115800 Phaseolus vulgaris
Phvul.008G230700 Phaseolus vulgaris
Potri.006G089901 Populus trichocarpa
Potri.008G059800 Populus trichocarpa
Potri.010G199100 Populus trichocarpa
Potri.016G101700 Populus trichocarpa
Pp3c20_17190 Physcomitrium patens
Pp3c23_11270 Physcomitrium patens
Pp3c23_5890 Physcomitrium patens
Pp3c24_9770 Physcomitrium patens
Prupe.2G240300 Prunus persica
Prupe.6G260800 Prunus persica
Psat0s3522g0080 Pisum sativum
Psat5g040800 Pisum sativum
PSO339G6508 Papaver somniferum
PSO513G0122 Papaver somniferum
QL07p029016 Quercus lobata
QL07p029681 Quercus lobata
QL08p061380 Quercus lobata
RcHm_v2.0_Chr1g0368491 Rosa chinensis
RcHm_v2.0_Chr3g0465371 Rosa chinensis
RcHm_v2.0_Chr3g0465381 Rosa chinensis
Rhsim03G0136000 Rhododendron simsii
Sabra06G0068000 Salix brachista
Sabra08G0043900 Salix brachista
Sabra10G0153300 Salix brachista
Sabra16G0102200 Salix brachista
SalBow4G2033 Salvia bowleyana
SalBow6G4561 Salvia bowleyana
SalBow6G6424 Salvia bowleyana
Sc01g0004610 Simmondsia chinensis
Sc10g0001850 Simmondsia chinensis
Sc11g0007670 Simmondsia chinensis
Sc11g0007680 Simmondsia chinensis
Sed0003922 Sechium edule
Sed0011801 Sechium edule
Sed0027004 Sechium edule
SEGI_22191 Sequoiadendron giganteum
SEGI_34406 Sequoiadendron giganteum
SGA_v2.0_scaffold2G00981 Striga asiatica
SGA_v2.0_scaffold30G12543 Striga asiatica
SGA_v2.0_scaffold446G51733 Striga asiatica
SGA_v2.0_scaffold453G51865 Striga asiatica
SHI22739 Sapria himalayana
SMO347G0148 Selaginella moellendorffii
Solyc05g052950.4 Solanum lycopersicum
Solyc09g011160.4 Solanum lycopersicum
Sopen05g031470 Solanum pennellii
Sopen09g005910 Solanum pennellii
Sp5g06900 Schrenkiella parvula
Sp5g08550 Schrenkiella parvula
TAR623G1486 Trochodendron aralioides
TAR633G1302 Trochodendron aralioides
TAR636G1749 Trochodendron aralioides
THA.LOC104806550 Tarenaya hassleriana
THA.LOC104808684 Tarenaya hassleriana
THA.LOC104824588 Tarenaya hassleriana
Thecc.05G033700 Theobroma cacao
Thecc.10G039800 Theobroma cacao
Thhalv10010326m.g Eutrema salsugineum
Thhalv10010341m.g Eutrema salsugineum
TPR.G10333 Trifolium pratense
TPR.G31073 Trifolium pratense
TPR.G34336 Trifolium pratense
TWI15G0168 Tripterygium wilfordii
TWI63G0853 Tripterygium wilfordii
unitig_578.g16195 Utricularia gibba
unitig_8.g4840 Utricularia gibba
unitig_88.g27650 Utricularia gibba
VMungo0647G2008 Vigna mungo
VMungo1383G2342 Vigna mungo
VMungo1383G3696 Vigna mungo
Zm00001eb036520 Zea mays
Zm00001eb148070 Zea mays
Zm00001eb367810 Zea mays

User provided reference genes

Program Settings