Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p08080 Brassica napus
A03p58100 Brassica napus
Aa31LG2G21970 Aethionema arabicum
Aa31sc143G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.187 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.3804 Anthoceros agrestis
Actinidia11004 Actinidia chinensis
Actinidia11101 Actinidia chinensis
Actinidia15362 Actinidia chinensis
Ah.03g138410 Amaranthus hybridus
Ah.05g180860 Amaranthus hybridus
AL7G24110 Arabidopsis lyrata
AL8G34040 Arabidopsis lyrata
Aqoxy4G00646 Aquilegia oxysepala
Aqoxy5G01541 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1U19Q5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LZQ0FA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M2UU0S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NIBJ6A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TSZ6TX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UE4GYS Arachis hypogaea
AT4G28450 Arabidopsis thaliana
AT5G57960 Arabidopsis thaliana
ATR0665G052 Amborella trichopoda
ATR0665G429 Amborella trichopoda
Atru.chr13.400 Acer truncatum
Atru.chr6.2875 Acer truncatum
AUR62008772 Chenopodium quinoa
AUR62014473 Chenopodium quinoa
AUR62025466 Chenopodium quinoa
AUR62034526 Chenopodium quinoa
AUR62043867 Chenopodium quinoa
BcaB03g16272 Brassica carinata
BcaB05g22389 Brassica carinata
BcaC06g32621 Brassica carinata
BolC2t07491H Brassica oleracea
BolC7t46099H Brassica oleracea
BraA02t05881Z Brassica rapa
BraA03t14876Z Brassica rapa
C02p13730 Brassica napus
C07p56220 Brassica napus
CAN.G209.6 Capsicum annuum
CAN.G851.43 Capsicum annuum
CANSAT25G1258 Cannabis sativa
CANSAT64G1696 Cannabis sativa
CARHR236220 Cardamine hirsuta
CARHR271740 Cardamine hirsuta
Carub.0007s1225 Capsella rubella
Carub.0008s1849 Capsella rubella
Ca_13381_v3 Cicer arietinum L.
Ca_30047_v3 Cicer arietinum L.
CBR_g34460 Chara braunii
CBR_g52691 Chara braunii
CBR_g60144 Chara braunii
Cc05_g07670 Coffea canephora
Cc10_g02420 Coffea canephora
CDE03G0236 Ceratophyllum demersum
CDE04G0034 Ceratophyllum demersum
CDE06G0545 Ceratophyllum demersum
Cfa013881 Carpinus fangiana
Cfa014656 Carpinus fangiana
Ciclev10000772m.g Citrus clementina
Ciclev10015209m.g Citrus clementina
CiPaw.03G181000 Carya illinoinensis
CiPaw.08G060900 Carya illinoinensis
ClCG02G002370 Citrullus lanatus
ClCG05G018690 Citrullus lanatus
COL.COLO4_18046 Corchorus olitorius
COL.COLO4_26238 Corchorus olitorius
COL.COLO4_28034 Corchorus olitorius
Cpa.g.c43591 Carica papaya
Cpa.g.sc140.3 Carica papaya
Cpa.g.sc140.4 Carica papaya
Cpa.g.sc83.89 Carica papaya
Cre07.g318702 Chlamydomonas reinhardtii
Cre16.g665650 Chlamydomonas reinhardtii
CsaV3_3G045490 Cucumis sativus L.
CsaV3_7G003080 Cucumis sativus L.
CSS0005893 Camellia sinensis var. sinensis
CSS0012531 Camellia sinensis var. sinensis
CSS0024007 Camellia sinensis var. sinensis
CSS0025846 Camellia sinensis var. sinensis
CSS0039568 Camellia sinensis var. sinensis
CSS0039896 Camellia sinensis var. sinensis
DCAR_013032 Daucus carota
DCAR_017516 Daucus carota
Dinv00035 Davidia involucrata
Dinv07536 Davidia involucrata
Dinv10164 Davidia involucrata
Duzib052G0349 Durio zibethinus
Duzib093G1612 Durio zibethinus
ECA240G2497 Erigeron canadensis
EL10Ac1g00604 Beta vulgaris
EL10Ac9g20811 Beta vulgaris
Eucgr.F01859 Eucalyptus grandis
Eucgr.K01052 Eucalyptus grandis
FAN07G0711 Fragaria x ananassa
FAN07G1962 Fragaria x ananassa
FAN15G1503 Fragaria x ananassa
FAN15G2087 Fragaria x ananassa
FAN15G2667 Fragaria x ananassa
FAN20G1367 Fragaria x ananassa
FAN20G3107 Fragaria x ananassa
FAN24G0448 Fragaria x ananassa
FAN24G1197 Fragaria x ananassa
FAN24G1576 Fragaria x ananassa
FAN24G2704 Fragaria x ananassa
FAN26G2864 Fragaria x ananassa
FAN27G0984 Fragaria x ananassa
FAN27G3197 Fragaria x ananassa
FAN27G3439 Fragaria x ananassa
FvH4_2g08930 Fragaria vesca
FvH4_2g10410 Fragaria vesca
FvH4_2g39280 Fragaria vesca
FvH4_4g06150 Fragaria vesca
FvH4_4g08860 Fragaria vesca
FvH4_4g09790 Fragaria vesca
Glyma.02G251700 Glycine max
Glyma.14G065100 Glycine max
Glyma.17G253900 Glycine max
Gohir.A03G154700 Gossypium hirsutum
Gohir.A05G190200 Gossypium hirsutum
Gohir.D02G177700 Gossypium hirsutum
Gohir.D05G193600 Gossypium hirsutum
Gorai.005G199500 Gossypium raimondii
Gorai.009G198600 Gossypium raimondii
GSVIVG01009778001 Vitis vinifera
GSVIVG01020601001 Vitis vinifera
HanXRQChr05g0140561 Helianthus annuus
HanXRQChr05g0151221 Helianthus annuus
HanXRQChr16g0505891 Helianthus annuus
Haze_13235 Corylus avellana
Haze_13238 Corylus avellana
Haze_22559 Corylus avellana
Haze_27107 Corylus avellana
Hma1.2p1_0002F.1_g002200 Hydrangea macrophylla
Hma1.2p1_0469F.1_g158880 Hydrangea macrophylla
Hma1.2p1_0469F.1_g158890 Hydrangea macrophylla
HPP92_000278 Vanilla planifolia
HPP92_013173 Vanilla planifolia
HPP92_013174 Vanilla planifolia
HPP92_013175 Vanilla planifolia
Hund07915 Selenicereus undatus
Hund17196 Selenicereus undatus
Lalb_Chr14g0369561 Lupinus albus
Lalb_Chr14g0369571 Lupinus albus
Lalb_Chr25g0280621 Lupinus albus
Lj3g0012051 Lotus japonicus
Lj4A33G81 Lonicera japonica
Lj5g0007882 Lotus japonicus
Lj8C108T5 Lonicera japonica
Lsat_1_v5_gn_4_64440 Lactuca sativa
Lsat_1_v5_gn_5_26741 Lactuca sativa
Manes.05G154700 Manihot esculenta
Manes.13G142500 Manihot esculenta
Mapoly0064s0088 Marchantia polymorpha
Mapoly0143s0027 Marchantia polymorpha
MBI05_g12583_MAGBIO Magnolia biondii
MBI07_g29117_MAGBIO Magnolia biondii
MCO01G363 Micromonas commoda
MCO16G051 Micromonas commoda
MD08G1220200 Malus domestica
MD15G1022100 Malus domestica
MD15G1410600 Malus domestica
MD15G1410700 Malus domestica
Medtr1g022960 Medicago truncatula
Medtr1g022980 Medicago truncatula
MELO3C003793.2 Cucumis melo
MELO3C018869.2 Cucumis melo
Migut.D00238 Erythranthe guttata
Migut.N03115 Erythranthe guttata
MSTRG.15131 Avicennia marina
Nitab4.5_0000621g0150 Nicotiana tabacum
Nitab4.5_0001861g0050 Nicotiana tabacum
Nitab4.5_0004546g0040 Nicotiana tabacum
Nitab4.5_0013623g0010 Nicotiana tabacum
Nn1g06426 Nelumbo nucifera
Nn5g29715 Nelumbo nucifera
Oeu016012.1 Olea europaea
Oeu046223.1 Olea europaea
Os01g0238900 Oryza sativa ssp. japonica
Os11g0592700 Oryza sativa ssp. japonica
Peaxi162Scf00189g00816 Petunia axillaris
Peaxi162Scf00845g00022 Petunia axillaris
PGR031G3600 Punica granatum
PGR142G4043 Punica granatum
PGSC0003DMG400003749 Solanum tuberosum
PGSC0003DMG401009395 Solanum tuberosum
Phvul.001G011200 Phaseolus vulgaris
Phvul.005G097400 Phaseolus vulgaris
Phvul.006G037700 Phaseolus vulgaris
Potri.002G031100 Populus trichocarpa
Potri.007G137300 Populus trichocarpa
Potri.017G014700 Populus trichocarpa
Pp3c26_340 Physcomitrium patens
Pp3c9_6000 Physcomitrium patens
PRCOL_00004156 Prasinoderma coloniale
PRCOL_00005495 Prasinoderma coloniale
Prupe.1G373900 Prunus persica
Prupe.1G573700 Prunus persica
Prupe.3G166600 Prunus persica
Prupe.6G177000 Prunus persica
Psat6g009760 Pisum sativum
Psat6g009920 Pisum sativum
PSO210G7210 Papaver somniferum
PSO478G0717 Papaver somniferum
PSO731G0115 Papaver somniferum
PSO764G0318 Papaver somniferum
PSO782G0979 Papaver somniferum
PSO832G1390 Papaver somniferum
QL02p010149 Quercus lobata
QL02p010154 Quercus lobata
QL08p040074 Quercus lobata
RcHm_v2.0_Chr6g0267881 Rosa chinensis
RcHm_v2.0_Chr6g0301721 Rosa chinensis
Rhsim06G0028500 Rhododendron simsii
Rhsim06G0138000 Rhododendron simsii
Sabra02G0024900 Salix brachista
Sabra05G0178900 Salix brachista
Sabra17G0011900 Salix brachista
SalBow8G2957 Salvia bowleyana
SalBow8G4848 Salvia bowleyana
Sc04g0004740 Simmondsia chinensis
Sc04g0004770 Simmondsia chinensis
Sc04g0004780 Simmondsia chinensis
Sc04g0004800 Simmondsia chinensis
Sc15g0007160 Simmondsia chinensis
Sc21g0003230 Simmondsia chinensis
Sc24g0000990 Simmondsia chinensis
Sed0023046 Sechium edule
Sed0027585 Sechium edule
SEGI_08221 Sequoiadendron giganteum
SEGI_18357 Sequoiadendron giganteum
SEGI_28186 Sequoiadendron giganteum
SGA_v2.0_scaffold162G37906 Striga asiatica
SGA_v2.0_scaffold70G23496 Striga asiatica
SMO347G0106 Selaginella moellendorffii
SMO364G0133 Selaginella moellendorffii
Solyc04g080770.3 Solanum lycopersicum
Solyc07g053660.3 Solanum lycopersicum
Sopen04g034360 Solanum pennellii
Sopen07g027630 Solanum pennellii
Sp6g19630 Schrenkiella parvula
Sp7g26430 Schrenkiella parvula
TAR381G1262 Trochodendron aralioides
TAR624G0407 Trochodendron aralioides
TAR626G1404 Trochodendron aralioides
THA.LOC104804051 Tarenaya hassleriana
Thecc.02G185400 Theobroma cacao
Thecc.08G034100 Theobroma cacao
Thhalv10013185m.g Eutrema salsugineum
Thhalv10025176m.g Eutrema salsugineum
TPR.G22970 Trifolium pratense
TPR.G30486 Trifolium pratense
TPR.G30494 Trifolium pratense
TWI14G0319 Tripterygium wilfordii
TWI56G0768 Tripterygium wilfordii
TWI59G1106 Tripterygium wilfordii
unitig_22.g6786 Utricularia gibba
unitig_85.g27364 Utricularia gibba
vmacro12361 Vaccinium macrocarpon
vmacro21683 Vaccinium macrocarpon
VMungo0647G1104 Vigna mungo
VMungo1080G0335 Vigna mungo
Zm00001eb064830 Zea mays
Zm00001eb167660 Zea mays

User provided reference genes

Program Settings