Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00760 Brassica napus
A03p01160 Brassica napus
A10p32590 Brassica napus
A10p33210 Brassica napus
Aa31LG1G21740 Aethionema arabicum
Aa31LG1G22330 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2605 Anthoceros agrestis
Actinidia20629 Actinidia chinensis
Actinidia26633 Actinidia chinensis
Actinidia26634 Actinidia chinensis
Actinidia28937 Actinidia chinensis
Ah.02g110850 Amaranthus hybridus
Ah.11g051170 Amaranthus hybridus
AL6G11710 Arabidopsis lyrata
AL6G12740 Arabidopsis lyrata
Aqoxy1G01153 Aquilegia oxysepala
Aqoxy2G01751 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.184WBH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.46VCLG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8BD1V8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GCS8UL Arachis hypogaea
AT5G02470 Arabidopsis thaliana
AT5G03415 Arabidopsis thaliana
ATR0219G016 Amborella trichopoda
ATR1127G086 Amborella trichopoda
Atru.chr8.1799 Acer truncatum
AUR62008146 Chenopodium quinoa
AUR62028728 Chenopodium quinoa
BcaB01g05822 Brassica carinata
BcaB01g05840 Brassica carinata
BcaB01g06165 Brassica carinata
BcaB01g06168 Brassica carinata
BcaB01g06187 Brassica carinata
BcaB05g21837 Brassica carinata
BcaC03g13008 Brassica carinata
BcaC06g31991 Brassica carinata
BcaC06g32056 Brassica carinata
BcaC06g32057 Brassica carinata
BcaNung02132 Brassica carinata
BolC2t06095H Brassica oleracea
BolC3t12660H Brassica oleracea
BolC3t12704H Brassica oleracea
BolC9t60075H Brassica oleracea
BolC9t60143H Brassica oleracea
BraA03t09460Z Brassica rapa
BraA03t09498Z Brassica rapa
BraA10t45294Z Brassica rapa
C02p01050 Brassica napus
C03p00980 Brassica napus
C03p01500 Brassica napus
C09p73390 Brassica napus
C09p74120 Brassica napus
CAN.G1313.4 Capsicum annuum
CAN.G960.59 Capsicum annuum
CANSAT35G0605 Cannabis sativa
CANSAT56G3595 Cannabis sativa
CARHR209930 Cardamine hirsuta
CARHR210910 Cardamine hirsuta
Carub.0006s0127 Capsella rubella
Carub.0006s0222 Capsella rubella
Ca_04919_v3 Cicer arietinum L.
Ca_04920_v3 Cicer arietinum L.
Ca_25109_v3 Cicer arietinum L.
CBR_g40817 Chara braunii
Cc06_g19290 Coffea canephora
CDE10G0268 Ceratophyllum demersum
CDE10G0407 Ceratophyllum demersum
Cfa016032 Carpinus fangiana
Ciclev10012088m.g Citrus clementina
CiPaw.05G220300 Carya illinoinensis
CiPaw.05G220600 Carya illinoinensis
CiPaw.06G031900 Carya illinoinensis
CiPaw.06G032400 Carya illinoinensis
CiPaw.09G191100 Carya illinoinensis
CiPaw.12G037800 Carya illinoinensis
ClCG10G009090 Citrullus lanatus
COL.COLO4_14824 Corchorus olitorius
COL.COLO4_26959 Corchorus olitorius
Cpa.g.c32800 Carica papaya
Cpa.g.c44644 Carica papaya
Cpa.g.sc738.1 Carica papaya
Cpa.g.sc738.2 Carica papaya
Cre07.g323000 Chlamydomonas reinhardtii
Cre13.g572950 Chlamydomonas reinhardtii
CsaV3_4G009290 Cucumis sativus L.
CSS0037651 Camellia sinensis var. sinensis
DCAR_014999 Daucus carota
DCAR_017679 Daucus carota
DCAR_020815 Daucus carota
Dinv03343 Davidia involucrata
Dinv29099 Davidia involucrata
Dinv29101 Davidia involucrata
Duzib093G0797 Durio zibethinus
Duzib093G0938 Durio zibethinus
Duzib106G0487 Durio zibethinus
Duzib128G0343 Durio zibethinus
Duzib128G1563 Durio zibethinus
ECA233G1525 Erigeron canadensis
ECA248G1100 Erigeron canadensis
EL10Ac5g10657 Beta vulgaris
Eucgr.A01674 Eucalyptus grandis
FAN01G1274 Fragaria x ananassa
FAN03G1495 Fragaria x ananassa
FAN05G5716 Fragaria x ananassa
FAN09G0188 Fragaria x ananassa
FAN10G0165 Fragaria x ananassa
FAN14G0833 Fragaria x ananassa
FvH4_6g14010 Fragaria vesca
FvH4_7g33950 Fragaria vesca
Glyma.01G228100 Glycine max
Glyma.11G010800 Glycine max
Glyma.11G091900 Glycine max
Glyma.12G018000 Glycine max
Gohir.A01G213600 Gossypium hirsutum
Gohir.A09G146400 Gossypium hirsutum
Gohir.A11G326500 Gossypium hirsutum
Gohir.D01G202300 Gossypium hirsutum
Gohir.D09G142100 Gossypium hirsutum
Gohir.D11G345400 Gossypium hirsutum
Gorai.002G247000 Gossypium raimondii
Gorai.006G163100 Gossypium raimondii
Gorai.007G375800 Gossypium raimondii
GSVIVG01025739001 Vitis vinifera
GSVIVG01034190001 Vitis vinifera
HanXRQChr02g0051671 Helianthus annuus
HanXRQChr13g0401001 Helianthus annuus
Haze_00426 Corylus avellana
Haze_26344 Corylus avellana
Hma1.2p1_2076F.1_g313320 Hydrangea macrophylla
HPP92_005094 Vanilla planifolia
HPP92_006326 Vanilla planifolia
HPP92_008485 Vanilla planifolia
HPP92_008487 Vanilla planifolia
HPP92_027879 Vanilla planifolia
Hund02786 Selenicereus undatus
Lalb_Chr01g0000931 Lupinus albus
Lalb_Chr05g0211261 Lupinus albus
Lalb_Chr09g0320211 Lupinus albus
Lalb_Chr19g0139961 Lupinus albus
Lj1g0005313 Lotus japonicus
Lj1g0014330 Lotus japonicus
Lj2A121T44 Lonicera japonica
Lj3A986G81 Lonicera japonica
Lj3C986T9 Lonicera japonica
LjContig00247g0023433 Lotus japonicus
Lsat_1_v5_gn_1_52320 Lactuca sativa
Lsat_1_v5_gn_2_106920 Lactuca sativa
Lsat_1_v5_gn_6_24981 Lactuca sativa
Manes.08G010800 Manihot esculenta
Manes.09G066000 Manihot esculenta
Mapoly0050s0010 Marchantia polymorpha
Mapoly0120s0051 Marchantia polymorpha
MBI05_g06553_MAGBIO Magnolia biondii
MBI14_g36920_MAGBIO Magnolia biondii
MBI14_g47392_MAGBIO Magnolia biondii
MBI18_g36549_MAGBIO Magnolia biondii
MCO11G554 Micromonas commoda
MD01G1235700 Malus domestica
MD04G1126400 Malus domestica
MD07G1308600 Malus domestica
Medtr4g077797 Medicago truncatula
Medtr4g077803 Medicago truncatula
MELO3C019031.2 Cucumis melo
Migut.J01656 Erythranthe guttata
Migut.K00137 Erythranthe guttata
MSTRG.26160 Avicennia marina
Nitab4.5_0000812g0100 Nicotiana tabacum
Nitab4.5_0004588g0040 Nicotiana tabacum
Nn2g10395 Nelumbo nucifera
Nn2g11606 Nelumbo nucifera
Nn2g13788 Nelumbo nucifera
Oeu021495.1 Olea europaea
Oeu057786.1 Olea europaea
Oeu059350.2 Olea europaea
Oeu059351.1 Olea europaea
Os01g0678700 Oryza sativa ssp. japonica
Os03g0152100 Oryza sativa ssp. japonica
Os10g0440100 Oryza sativa ssp. japonica
Peaxi162Scf00003g04919 Petunia axillaris
Peaxi162Scf00165g01726 Petunia axillaris
Peaxi162Scf00165g01727 Petunia axillaris
PGR004G1629 Punica granatum
PGR142G2449 Punica granatum
PGSC0003DMG400008373 Solanum tuberosum
PGSC0003DMG401008915 Solanum tuberosum
Phvul.002G039800 Phaseolus vulgaris
Phvul.011G020500 Phaseolus vulgaris
Potri.006G124200 Populus trichocarpa
Potri.016G093200 Populus trichocarpa
Pp3c13_21530 Physcomitrium patens
Pp3c3_11980 Physcomitrium patens
Pp3c4_13590 Physcomitrium patens
PRCOL_00001400 Prasinoderma coloniale
Prupe.2G325800 Prunus persica
Prupe.6G253200 Prunus persica
Psat7g171840 Pisum sativum
PSO063G1007 Papaver somniferum
PSO063G1451 Papaver somniferum
PSO063G2273 Papaver somniferum
PSO063G3553 Papaver somniferum
PSO339G4012 Papaver somniferum
PSO339G6281 Papaver somniferum
PSO782G0697 Papaver somniferum
PSO801G0281 Papaver somniferum
PSO832G0113 Papaver somniferum
PSO832G0855 Papaver somniferum
PSO832G3227 Papaver somniferum
PSO832G4438 Papaver somniferum
QL07p048017 Quercus lobata
QL07p048061 Quercus lobata
QL09p024057 Quercus lobata
QL09p024426 Quercus lobata
RcHm_v2.0_Chr1g0384181 Rosa chinensis
RcHm_v2.0_Chr3g0466841 Rosa chinensis
Rhsim02G0071500 Rhododendron simsii
Rhsim05G0191200 Rhododendron simsii
Sabra06G0098300 Salix brachista
Sabra16G0098500 Salix brachista
SalBow1G1286 Salvia bowleyana
SalBow1G2356 Salvia bowleyana
SalBow6G5888 Salvia bowleyana
Sc04g0001520 Simmondsia chinensis
Sc12g0004990 Simmondsia chinensis
Sed0012655 Sechium edule
Sed0023610 Sechium edule
SEGI_09093 Sequoiadendron giganteum
SEGI_10652 Sequoiadendron giganteum
SEGI_14534 Sequoiadendron giganteum
SEGI_16950 Sequoiadendron giganteum
SEGI_35198 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30291 Striga asiatica
SGA_v2.0_scaffold273G46397 Striga asiatica
SGA_v2.0_scaffold69G23151 Striga asiatica
SGA_v2.0_scaffold94G28542 Striga asiatica
SHI12261 Sapria himalayana
SHI12262 Sapria himalayana
SHI12264 Sapria himalayana
SHI12270 Sapria himalayana
SMO356G0328 Selaginella moellendorffii
Solyc09g010670.4 Solanum lycopersicum
Solyc10g078430.2 Solanum lycopersicum
Sopen09g005380 Solanum pennellii
Sopen10g029090 Solanum pennellii
Sp3g08220 Schrenkiella parvula
Sp6g39330 Schrenkiella parvula
Sp6g40040 Schrenkiella parvula
TAR623G1280 Trochodendron aralioides
TAR633G1413 Trochodendron aralioides
TAR636G1397 Trochodendron aralioides
THA.LOC104816281 Tarenaya hassleriana
THA.LOC104816350 Tarenaya hassleriana
THA.LOC104823257 Tarenaya hassleriana
THA.LOC104826915 Tarenaya hassleriana
Thecc.05G041400 Theobroma cacao
Thecc.05G067400 Theobroma cacao
Thhalv10014118m.g Eutrema salsugineum
Thhalv10014274m.g Eutrema salsugineum
TPR.G27184 Trifolium pratense
TPR.G27186 Trifolium pratense
TPR.G32905 Trifolium pratense
TWI53G1670 Tripterygium wilfordii
TWI74G0772 Tripterygium wilfordii
unitig_37.g12698 Utricularia gibba
unitig_46.g18436 Utricularia gibba
vmacro20139 Vaccinium macrocarpon
VMungo1127G1098 Vigna mungo
VMungo1215G2597 Vigna mungo
Zm00001eb004190 Zea mays
Zm00001eb222650 Zea mays
Zm00001eb360340 Zea mays
Zm00001eb403140 Zea mays

User provided reference genes

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