Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p00070 Brassica napus
A04p32360 Brassica napus
A05p03340 Brassica napus
Aa31LG10G13280 Aethionema arabicum
Aa31LG10G17360 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5151 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5570 Anthoceros agrestis
Actinidia03640 Actinidia chinensis
Actinidia19422 Actinidia chinensis
Ah.10g038620 Amaranthus hybridus
Ah.13g068260 Amaranthus hybridus
AL4G41270 Arabidopsis lyrata
AL5G46350 Arabidopsis lyrata
Aqoxy1G00328 Aquilegia oxysepala
Aqoxy2G02157 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7AZW9Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9J7RGN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KK31MU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T59EZC Arachis hypogaea
AT2G42710 Arabidopsis thaliana
AT3G63490 Arabidopsis thaliana
ATR0012G045 Amborella trichopoda
ATR0320G017 Amborella trichopoda
Atru.chr11.2577 Acer truncatum
Atru.chr6.2771_Atru.chr6.2772 Acer truncatum
AUR62009416 Chenopodium quinoa
AUR62023093 Chenopodium quinoa
AUR62033012 Chenopodium quinoa
AUR62034062 Chenopodium quinoa
BcaB02g08057 Brassica carinata
BcaC01g00560 Brassica carinata
BcaC02g07223 Brassica carinata
BcaC02g10355 Brassica carinata
BolC4t22027H Brassica oleracea
BolC4t28487H Brassica oleracea
BraA04t15727Z Brassica rapa
BraA04t18689Z Brassica rapa
BraA05t19322Z Brassica rapa
C04p03910 Brassica napus
C04p29830 Brassica napus
C04p69870 Brassica napus
CANSAT80G0809 Cannabis sativa
CARHR137810 Cardamine hirsuta
CARHR291480 Cardamine hirsuta
Carub.0004s2515 Capsella rubella
Carub.0005s3010 Capsella rubella
Ca_18865_v3 Cicer arietinum L.
Ca_20460_v3 Cicer arietinum L.
Ca_30001_v3 Cicer arietinum L.
CBR_g34615 Chara braunii
CBR_g41806 Chara braunii
CBR_g8929 Chara braunii
Cc02_g28550 Coffea canephora
Cc05_g08460 Coffea canephora
CDE02G0028 Ceratophyllum demersum
CDE02G2741 Ceratophyllum demersum
CDE02G4361 Ceratophyllum demersum
CDE02G4709 Ceratophyllum demersum
CDE04G1342 Ceratophyllum demersum
CDE04G1509 Ceratophyllum demersum
CDE04G3539 Ceratophyllum demersum
Cfa022637 Carpinus fangiana
Cfa023977 Carpinus fangiana
Ciclev10017936m.g Citrus clementina
Ciclev10031877m.g Citrus clementina
CiPaw.03G194200 Carya illinoinensis
CiPaw.14G002800 Carya illinoinensis
ClCG07G012090 Citrullus lanatus
ClCG09G004400 Citrullus lanatus
ClCG10G012180 Citrullus lanatus
COL.COLO4_12342 Corchorus olitorius
COL.COLO4_33600 Corchorus olitorius
Cpa.g.c29343.2 Carica papaya
Cpa.g.sc125.44 Carica papaya
Cpa.g.sc125.45 Carica papaya
Cpa.g.sc82.2 Carica papaya
Cre02.g088900 Chlamydomonas reinhardtii
Cre06.g278090 Chlamydomonas reinhardtii
CsaV3_3G031960 Cucumis sativus L.
CsaV3_4G002060 Cucumis sativus L.
CsaV3_7G030740 Cucumis sativus L.
CSS0005140 Camellia sinensis var. sinensis
CSS0027034 Camellia sinensis var. sinensis
CSS0049958 Camellia sinensis var. sinensis
CSS0050305 Camellia sinensis var. sinensis
DCAR_029704 Daucus carota
Dinv07682 Davidia involucrata
Dinv09310 Davidia involucrata
Dinv12385 Davidia involucrata
Dinv43411 Davidia involucrata
Duzib133G0102 Durio zibethinus
Duzib138G1745 Durio zibethinus
Duzib264G0378 Durio zibethinus
ECA232G1095 Erigeron canadensis
ECA238G3317 Erigeron canadensis
EL10Ac2g04366 Beta vulgaris
EL10Ac8g19416 Beta vulgaris
Eucgr.G03333 Eucalyptus grandis
Eucgr.K01141 Eucalyptus grandis
FAN01G2421 Fragaria x ananassa
FAN02G3352 Fragaria x ananassa
FAN03G0396 Fragaria x ananassa
FAN03G2253 Fragaria x ananassa
FAN03G2859 Fragaria x ananassa
FAN05G1307 Fragaria x ananassa
FAN06G1664 Fragaria x ananassa
FAN09G4070 Fragaria x ananassa
FAN10G0515 Fragaria x ananassa
FAN10G2774 Fragaria x ananassa
FAN10G3115 Fragaria x ananassa
FvH4_6g27601 Fragaria vesca
FvH4_7g01650 Fragaria vesca
Glyma.03G107166 Glycine max
Glyma.06G276000 Glycine max
Glyma.09G227200 Glycine max
Glyma.12G009600 Glycine max
Glyma.12G129400 Glycine max
Glyma.15G235200 Glycine max
Gohir.A03G182700 Gossypium hirsutum
Gohir.A08G142600 Gossypium hirsutum
Gohir.D02G204300 Gossypium hirsutum
Gohir.D08G163600 Gossypium hirsutum
Gorai.004G170500 Gossypium raimondii
Gorai.005G231600 Gossypium raimondii
GSVIVG01020727001 Vitis vinifera
GSVIVG01032196001 Vitis vinifera
HanXRQChr09g0260281 Helianthus annuus
HanXRQChr14g0439821 Helianthus annuus
Haze_03134 Corylus avellana
Haze_03137 Corylus avellana
Haze_13415 Corylus avellana
Haze_26792 Corylus avellana
Hma1.2p1_0178F.1_g078670 Hydrangea macrophylla
Hma1.2p1_0178F.1_g078690 Hydrangea macrophylla
Hma1.2p1_0685F.1_g203160 Hydrangea macrophylla
HPP92_020036 Vanilla planifolia
HPP92_020037 Vanilla planifolia
HPP92_020066 Vanilla planifolia
Hund12363 Selenicereus undatus
Hund14183 Selenicereus undatus
Hund15357 Selenicereus undatus
Hund25053 Selenicereus undatus
Lalb_Chr03g0024101 Lupinus albus
Lalb_Chr03g0030001 Lupinus albus
Lj3g0003002 Lotus japonicus
Lj3g0003136 Lotus japonicus
Lj7A576T82 Lonicera japonica
Lsat_1_v5_gn_2_60700 Lactuca sativa
Lsat_1_v5_gn_5_5261 Lactuca sativa
Lsat_1_v5_gn_9_87321 Lactuca sativa
Manes.01G132100 Manihot esculenta
Manes.07G010300 Manihot esculenta
Manes.10G136300 Manihot esculenta
Mapoly0043s0143 Marchantia polymorpha
Mapoly0062s0076 Marchantia polymorpha
MBI06_g13023_MAGBIO Magnolia biondii
MBI19_g19507_MAGBIO Magnolia biondii
MBI19_g19508_MAGBIO Magnolia biondii
MCO01G223 Micromonas commoda
MCO07G072 Micromonas commoda
MD02G1302000 Malus domestica
MD02G1302200 Malus domestica
MD07G1022000 Malus domestica
MD11G1004300 Malus domestica
MD17G1265500 Malus domestica
Medtr0059s0060 Medicago truncatula
Medtr4g080120 Medicago truncatula
MELO3C000754.2 Cucumis melo
MELO3C017830.2 Cucumis melo
MELO3C023582.2 Cucumis melo
MELO3C023997.2 Cucumis melo
MELO3C033461.2 Cucumis melo
MELO3C034838.2 Cucumis melo
Migut.B01269 Erythranthe guttata
Migut.H02144 Erythranthe guttata
MSTRG.20562 Avicennia marina
Nitab4.5_0000707g0020 Nicotiana tabacum
Nitab4.5_0002027g0210 Nicotiana tabacum
Nitab4.5_0002388g0060 Nicotiana tabacum
Nitab4.5_0006142g0030 Nicotiana tabacum
Nn2g15221 Nelumbo nucifera
Nn6g33711 Nelumbo nucifera
Nn7g36294 Nelumbo nucifera
Oeu024440.1 Olea europaea
Oeu024443.1 Olea europaea
Oeu027379.3 Olea europaea
Oeu049479.1 Olea europaea
Os05g0388500 Oryza sativa ssp. japonica
Os06g0546400 Oryza sativa ssp. japonica
Peaxi162Scf00229g01118 Petunia axillaris
Peaxi162Scf00694g00429 Petunia axillaris
PGR031G2824 Punica granatum
PGR142G0587 Punica granatum
PGSC0003DMG400006846 Solanum tuberosum
Phvul.011G011500 Phaseolus vulgaris
Phvul.011G128300 Phaseolus vulgaris
Potri.001G262400 Populus trichocarpa
Potri.009G057100 Populus trichocarpa
Potri.014G143000 Populus trichocarpa
Pp3c1_18350 Physcomitrium patens
Pp3c20_12680 Physcomitrium patens
Pp3c23_11170 Physcomitrium patens
Pp3c23_7820 Physcomitrium patens
Pp3c24_9740 Physcomitrium patens
PRCOL_00003657 Prasinoderma coloniale
PRCOL_00003718 Prasinoderma coloniale
Prupe.2G022100 Prunus persica
Prupe.3G115600 Prunus persica
Psat7g163880 Pisum sativum
Psat7g200640 Pisum sativum
PSO063G6143 Papaver somniferum
PSO339G4165 Papaver somniferum
PSO384G1180 Papaver somniferum
PSO782G1110 Papaver somniferum
QL04p009835 Quercus lobata
QL08p042161 Quercus lobata
RcHm_v2.0_Chr1g0317921 Rosa chinensis
RcHm_v2.0_Chr2g0130111 Rosa chinensis
Rhsim01G0126900 Rhododendron simsii
Rhsim04G0075000 Rhododendron simsii
Sabra09G0041800 Salix brachista
Sabra16G0160900 Salix brachista
SalBow5G1388 Salvia bowleyana
SalBow5G5543 Salvia bowleyana
SalBow7G1898 Salvia bowleyana
Sc06g0002080 Simmondsia chinensis
Sc11g0009060 Simmondsia chinensis
Sed0007802 Sechium edule
Sed0016392 Sechium edule
Sed0022327 Sechium edule
Sed0025684 Sechium edule
SEGI_05268 Sequoiadendron giganteum
SEGI_22662 Sequoiadendron giganteum
SGA_v2.0_scaffold130G34199 Striga asiatica
SGA_v2.0_scaffold34G13883 Striga asiatica
SGA_v2.0_scaffold4G02496 Striga asiatica
SHI10508 Sapria himalayana
SMO347G0589 Selaginella moellendorffii
SMO353G0403 Selaginella moellendorffii
Solyc01g087730.4 Solanum lycopersicum
Solyc12g013990.3 Solanum lycopersicum
Sopen01g034680 Solanum pennellii
Sopen12g005740 Solanum pennellii
Sp5g00070 Schrenkiella parvula
TAR627G0654 Trochodendron aralioides
TAR633G0895 Trochodendron aralioides
TAR633G1571 Trochodendron aralioides
THA.LOC104803004 Tarenaya hassleriana
THA.LOC104817578 Tarenaya hassleriana
THA.LOC104823029 Tarenaya hassleriana
THA.LOC104823930 Tarenaya hassleriana
Thecc.01G152800 Theobroma cacao
Thecc.01G406900 Theobroma cacao
Thecc.06G090200 Theobroma cacao
Thhalv10006062m.g Eutrema salsugineum
Thhalv10016743m.g Eutrema salsugineum
TPR.G13813 Trifolium pratense
TPR.G30166 Trifolium pratense
TWI09G0847 Tripterygium wilfordii
TWI53G1933 Tripterygium wilfordii
TWI59G1098 Tripterygium wilfordii
unitig_0.g1394 Utricularia gibba
unitig_27.g25146 Utricularia gibba
unitig_61.g26459 Utricularia gibba
vmacro09209 Vaccinium macrocarpon
vmacro09210 Vaccinium macrocarpon
vmacro09211 Vaccinium macrocarpon
vmacro21196 Vaccinium macrocarpon
VMungo1127G1573 Vigna mungo
VMungo1127G2150 Vigna mungo
Zm00001eb287080 Zea mays
Zm00001eb383810 Zea mays

User provided reference genes

Program Settings