Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p32620 Brassica napus
A07p22470 Brassica napus
A09p21470 Brassica napus
Aa31LG10G10440 Aethionema arabicum
Aa31LG1G16320 Aethionema arabicum
Aa31LG5G20020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1167 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.1168 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.2625 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2921 Anthoceros agrestis
Actinidia13866 Actinidia chinensis
Actinidia29210 Actinidia chinensis
Ah.01g006220 Amaranthus hybridus
Ah.01g019470 Amaranthus hybridus
Ah.16g107410 Amaranthus hybridus
AL5G36560 Arabidopsis lyrata
AL6G17480 Arabidopsis lyrata
AL8G43470 Arabidopsis lyrata
Aqoxy144s005 Aquilegia oxysepala
Aqoxy4G00199 Aquilegia oxysepala
Aqoxy4G03003 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1CH89M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.251GCH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JT8BQ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KV6MGK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MFR5IV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MZ3RBY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y1CLBV Arachis hypogaea
AT3G55410 Arabidopsis thaliana
AT5G65750 Arabidopsis thaliana
ATR0222G011 Amborella trichopoda
Atru.chr12.514 Acer truncatum
AUR62003360 Chenopodium quinoa
AUR62003361 Chenopodium quinoa
AUR62011335 Chenopodium quinoa
AUR62016726 Chenopodium quinoa
AUR62029475 Chenopodium quinoa
AUR62038380 Chenopodium quinoa
AUR62038978 Chenopodium quinoa
AUR62040946 Chenopodium quinoa
AUR62044237 Chenopodium quinoa
AUR62044244 Chenopodium quinoa
BcaB01g02596 Brassica carinata
BcaB02g07691 Brassica carinata
BcaB07g30917 Brassica carinata
BcaC01g02837 Brassica carinata
BcaC04g21804 Brassica carinata
BcaC08g44733 Brassica carinata
BolC3t18256H Brassica oleracea
BolC6t37462H Brassica oleracea
BolC9t55608H Brassica oleracea
BraA06t26190Z Brassica rapa
BraA07t29923Z Brassica rapa
BraA09t37747Z Brassica rapa
C03p59910 Brassica napus
C06p22670 Brassica napus
C09p10660 Brassica napus
C09p27350 Brassica napus
CAN.G1013.3 Capsicum annuum
CAN.G1823.4 Capsicum annuum
CAN.G786.27 Capsicum annuum
CANSAT56G1173 Cannabis sativa
CARHR165430 Cardamine hirsuta
CARHR279750 Cardamine hirsuta
Carub.0005s2213 Capsella rubella
Carub.0008s2665 Capsella rubella
Ca_07219_v3 Cicer arietinum L.
Ca_11293_v3 Cicer arietinum L.
Ca_28919_v3 Cicer arietinum L.
CBR_g23813 Chara braunii
CBR_g40492 Chara braunii
Cc02_g08270 Coffea canephora
Cc02_g08280 Coffea canephora
Cc02_g08290 Coffea canephora
CDE02G0490 Ceratophyllum demersum
CDE04G2199 Ceratophyllum demersum
CDE07G1186 Ceratophyllum demersum
CDE08G0893 Ceratophyllum demersum
CDE12G0152 Ceratophyllum demersum
Cfa001513 Carpinus fangiana
Ciclev10018656m.g Citrus clementina
Ciclev10030605m.g Citrus clementina
CiPaw.01G283300 Carya illinoinensis
CiPaw.02G181700 Carya illinoinensis
ClCG07G003220 Citrullus lanatus
ClCG09G020110 Citrullus lanatus
COL.COLO4_14954 Corchorus olitorius
COL.COLO4_14955 Corchorus olitorius
Cpa.g.sc162.13 Carica papaya
Cre12.g537200 Chlamydomonas reinhardtii
CsaV3_5G007980 Cucumis sativus L.
CsaV3_5G026370 Cucumis sativus L.
CSS0016169 Camellia sinensis var. sinensis
CSS0028540 Camellia sinensis var. sinensis
DCAR_015201 Daucus carota
DCAR_023132 Daucus carota
Dinv25981 Davidia involucrata
Dinv31427 Davidia involucrata
Dinv31428 Davidia involucrata
Duzib106G0471 Durio zibethinus
Duzib114G0545 Durio zibethinus
Duzib114G0840 Durio zibethinus
ECA234G2004 Erigeron canadensis
ECA236G4285 Erigeron canadensis
ECA240G2985 Erigeron canadensis
EL10Ac9g21735 Beta vulgaris
Eucgr.G01375 Eucalyptus grandis
FAN01G0088 Fragaria x ananassa
FAN01G1005 Fragaria x ananassa
FAN01G2265 Fragaria x ananassa
FAN03G2239 Fragaria x ananassa
FAN03G2251 Fragaria x ananassa
FAN06G2023 Fragaria x ananassa
FAN06G2985 Fragaria x ananassa
FAN06G3153 Fragaria x ananassa
FAN06G3275 Fragaria x ananassa
FAN06G4688 Fragaria x ananassa
FAN10G1331 Fragaria x ananassa
FvH4_7g21770 Fragaria vesca
FvH4_7g21780 Fragaria vesca
FvH4_7g21781 Fragaria vesca
FvH4_7g21851 Fragaria vesca
FvH4_7g21852 Fragaria vesca
Glyma.02G094300 Glycine max
Glyma.10G290102 Glycine max
Glyma.18G287400 Glycine max
Glyma.20G099200 Glycine max
Gohir.A05G350300 Gossypium hirsutum
Gohir.A05G350400 Gossypium hirsutum
Gohir.A10G215300 Gossypium hirsutum
Gohir.D04G062100 Gossypium hirsutum
Gohir.D04G062200 Gossypium hirsutum
Gohir.D10G224400 Gossypium hirsutum
Gorai.011G255300 Gossypium raimondii
Gorai.012G069400 Gossypium raimondii
Gorai.012G069500 Gossypium raimondii
GSVIVG01016597001 Vitis vinifera
HanXRQChr06g0180351 Helianthus annuus
HanXRQChr09g0241971 Helianthus annuus
HanXRQChr10g0315571 Helianthus annuus
Haze_17028 Corylus avellana
Haze_26369 Corylus avellana
Haze_26503 Corylus avellana
Hma1.2p1_0573F.1_g181410 Hydrangea macrophylla
Hma1.2p1_0585F.1_g183690 Hydrangea macrophylla
HPP92_006234 Vanilla planifolia
HPP92_006289 Vanilla planifolia
HPP92_014316 Vanilla planifolia
HPP92_014317 Vanilla planifolia
Hund02777 Selenicereus undatus
Hund09461 Selenicereus undatus
Hund12551 Selenicereus undatus
Lalb_Chr04g0257881 Lupinus albus
Lalb_Chr10g0091801 Lupinus albus
Lalb_Chr10g0091811 Lupinus albus
Lalb_Chr17g0336221 Lupinus albus
Lj1A933T66 Lonicera japonica
Lj1g0019224 Lotus japonicus
Lj2P10T22 Lonicera japonica
Lj5g0008776 Lotus japonicus
Lj7P368T38 Lonicera japonica
Lj8C87G5 Lonicera japonica
Lsat_1_v5_gn_2_76020 Lactuca sativa
Lsat_1_v5_gn_5_105621 Lactuca sativa
Lsat_1_v5_gn_5_95321 Lactuca sativa
Lsat_1_v5_gn_8_58500 Lactuca sativa
Manes.07G112300 Manihot esculenta
Manes.10G034400 Manihot esculenta
Manes.10G034500 Manihot esculenta
Mapoly0016s0186 Marchantia polymorpha
Mapoly0023s0039 Marchantia polymorpha
MBI05_g43628_MAGBIO Magnolia biondii
MBI14_g43765_MAGBIO Magnolia biondii
MCO07G479 Micromonas commoda
MCO16G552 Micromonas commoda
MD01G1122800 Malus domestica
MD02G1281300 Malus domestica
MD02G1281400 Malus domestica
MD02G1281500 Malus domestica
MD02G1281600 Malus domestica
MD07G1192300 Malus domestica
MD07G1192400 Malus domestica
Medtr1g115340 Medicago truncatula
Medtr7g023770 Medicago truncatula
MELO3C023844.2 Cucumis melo
MELO3C025454.2 Cucumis melo
Migut.B01245 Erythranthe guttata
Migut.N01857 Erythranthe guttata
MSTRG.20503 Avicennia marina
MSTRG.5075 Avicennia marina
Nitab4.5_0001063g0080 Nicotiana tabacum
Nitab4.5_0001831g0100 Nicotiana tabacum
Nitab4.5_0005525g0020 Nicotiana tabacum
Nitab4.5_0009327g0010 Nicotiana tabacum
Nn1g02956 Nelumbo nucifera
Nn2g12898 Nelumbo nucifera
Nn2g14934 Nelumbo nucifera
Nn7g36515 Nelumbo nucifera
Oeu013070.1 Olea europaea
Oeu013077.1 Olea europaea
Os04g0390000 Oryza sativa ssp. japonica
Os07g0695800 Oryza sativa ssp. japonica
Peaxi162Scf00015g00178 Petunia axillaris
Peaxi162Scf00060g00111 Petunia axillaris
PGR004G0858 Punica granatum
PGR042G0001 Punica granatum
PGSC0003DMG400023519 Solanum tuberosum
PGSC0003DMG400027739 Solanum tuberosum
Phvul.007G011400 Phaseolus vulgaris
Phvul.008G014400 Phaseolus vulgaris
Potri.008G051600 Populus trichocarpa
Potri.010G209000 Populus trichocarpa
Pp3c20_9260 Physcomitrium patens
Pp3c23_7750 Physcomitrium patens
Pp3c6_18690 Physcomitrium patens
Pp3c6_9160 Physcomitrium patens
PRCOL_00001005 Prasinoderma coloniale
Prupe.2G230300 Prunus persica
Prupe.2G230400 Prunus persica
Psat3g184040 Pisum sativum
Psat6g236280 Pisum sativum
PSO339G0907 Papaver somniferum
PSO339G3514 Papaver somniferum
PSO648G0087 Papaver somniferum
QL07p018008 Quercus lobata
QL08p058905 Quercus lobata
RcHm_v2.0_Chr1g0365921 Rosa chinensis
RcHm_v2.0_Chr1g0366031 Rosa chinensis
Rhsim03G0127100 Rhododendron simsii
Rhsim09G0099400 Rhododendron simsii
Rhsim09G0164000 Rhododendron simsii
Sabra08G0037000 Salix brachista
Sabra10G0161500 Salix brachista
SalBow5G3263 Salvia bowleyana
SalBow6G0044 Salvia bowleyana
SalBow6G1254 Salvia bowleyana
Sc17g0005540 Simmondsia chinensis
Sc20g0002580 Simmondsia chinensis
Sc20g0002590 Simmondsia chinensis
Sed0014723 Sechium edule
Sed0017299 Sechium edule
Sed0022866 Sechium edule
SEGI_05965 Sequoiadendron giganteum
SEGI_28992 Sequoiadendron giganteum
SEGI_38283 Sequoiadendron giganteum
SGA_v2.0_scaffold597G53118 Striga asiatica
SGA_v2.0_scaffold74G24588 Striga asiatica
SHI34589 Sapria himalayana
SMO018G0001 Selaginella moellendorffii
SMO115G0236 Selaginella moellendorffii
SMO115G0324 Selaginella moellendorffii
SMO166G0085 Selaginella moellendorffii
SMO351G0422 Selaginella moellendorffii
Solyc04g011350.3 Solanum lycopersicum
Solyc05g054640.4 Solanum lycopersicum
Sopen04g005540 Solanum pennellii
Sopen05g033120 Solanum pennellii
Sp2g28850 Schrenkiella parvula
Sp5g07060 Schrenkiella parvula
TAR369G0203 Trochodendron aralioides
TAR623G0140 Trochodendron aralioides
TAR623G1700 Trochodendron aralioides
TAR633G2517 Trochodendron aralioides
TAR636G0530 Trochodendron aralioides
TAR636G2076 Trochodendron aralioides
THA.LOC104798368 Tarenaya hassleriana
THA.LOC104807485 Tarenaya hassleriana
Thecc.10G047600 Theobroma cacao
Thecc.10G047700 Theobroma cacao
Thhalv10003576m.g Eutrema salsugineum
Thhalv10010095m.g Eutrema salsugineum
TPR.G14015 Trifolium pratense
TPR.G19184 Trifolium pratense
TPR.G32156 Trifolium pratense
TWI38G0689 Tripterygium wilfordii
unitig_0.g421 Utricularia gibba
vmacro07154 Vaccinium macrocarpon
VMungo0720G0053 Vigna mungo
VMungo1309G0263 Vigna mungo
VMungo1383G3046 Vigna mungo
Zm00001eb085340 Zea mays
Zm00001eb271700 Zea mays
Zm00001eb395670 Zea mays
Zm00001eb421170 Zea mays

User provided reference genes

Program Settings