Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00330 Brassica napus
A03p21100 Brassica napus
A05p07820 Brassica napus
Aa31LG1G23040 Aethionema arabicum
Aa31LG5G23710 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2004 Anthoceros agrestis
Actinidia03319 Actinidia chinensis
Actinidia05362 Actinidia chinensis
Actinidia10631 Actinidia chinensis
Actinidia11578 Actinidia chinensis
Actinidia20740 Actinidia chinensis
Actinidia25719 Actinidia chinensis
Actinidia29093 Actinidia chinensis
Ah.12g058710 Amaranthus hybridus
AL4G35250 Arabidopsis lyrata
AL4G35340 Arabidopsis lyrata
AL6G10740 Arabidopsis lyrata
Aqoxy4G02541 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.62IRHW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9C23R3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PWAL8M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RS5FH0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UTRD0U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XW1WV5 Arachis hypogaea
AT2G38250 Arabidopsis thaliana
AT5G01380 Arabidopsis thaliana
ATR0829G226 Amborella trichopoda
Atru.chr6.2113 Acer truncatum
Atru.chr8.2254 Acer truncatum
AUR62030495 Chenopodium quinoa
AUR62030800 Chenopodium quinoa
BcaB01g03713 Brassica carinata
BcaB01g06095 Brassica carinata
BcaB01g06227 Brassica carinata
BcaB02g09213 Brassica carinata
BcaC01g05554 Brassica carinata
BcaC02g11965 Brassica carinata
BcaC06g31960 Brassica carinata
BcaC06g31977 Brassica carinata
BcaNung03288 Brassica carinata
BcaNung03291 Brassica carinata
BolC2t06017H Brassica oleracea
BolC3t12615H Brassica oleracea
BolC3t14890H Brassica oleracea
BolC4t22552H Brassica oleracea
BolC9t60197H Brassica oleracea
BraA02t04690Z Brassica rapa
BraA03t09424Z Brassica rapa
BraA03t11351Z Brassica rapa
BraA05t19750Z Brassica rapa
C02p00190 Brassica napus
C03p00490 Brassica napus
C03p24990 Brassica napus
C04p09460 Brassica napus
C09p74650 Brassica napus
CAN.G1741.8 Capsicum annuum
CAN.G1741.9 Capsicum annuum
CAN.G740.1 Capsicum annuum
CANSAT21G2144 Cannabis sativa
CARHR132840 Cardamine hirsuta
CARHR211760 Cardamine hirsuta
Carub.0004s2021 Capsella rubella
Carub.0006s0044 Capsella rubella
Ca_05943_v3 Cicer arietinum L.
Ca_20263_v3 Cicer arietinum L.
Ca_25080_v3 Cicer arietinum L.
CBR_g49304 Chara braunii
Cc06_g01240 Coffea canephora
CDE02G1459 Ceratophyllum demersum
CDE04G1692 Ceratophyllum demersum
CDE05G2952 Ceratophyllum demersum
CDE06G2499 Ceratophyllum demersum
CDE09G0096 Ceratophyllum demersum
Ciclev10002156m.g Citrus clementina
Ciclev10012342m.g Citrus clementina
CiPaw.09G210200 Carya illinoinensis
CiPaw.10G157100 Carya illinoinensis
CiPaw.11G104500 Carya illinoinensis
ClCG04G006960 Citrullus lanatus
ClCG07G011310 Citrullus lanatus
ClCG10G022190 Citrullus lanatus
COL.COLO4_14521 Corchorus olitorius
COL.COLO4_37235 Corchorus olitorius
Cpa.g.sc11.127 Carica papaya
Cpa.g.sc137.19 Carica papaya
CsaV3_3G033700 Cucumis sativus L.
CsaV3_4G006900 Cucumis sativus L.
CsaV3_4G026300 Cucumis sativus L.
CSS0001804 Camellia sinensis var. sinensis
CSS0020108 Camellia sinensis var. sinensis
CSS0046191 Camellia sinensis var. sinensis
DCAR_000701 Daucus carota
DCAR_018698 Daucus carota
DCAR_024017 Daucus carota
DCAR_028858 Daucus carota
Dinv07758 Davidia involucrata
Dinv09436 Davidia involucrata
Dinv11630 Davidia involucrata
Dinv37461 Davidia involucrata
Duzib093G0874 Durio zibethinus
Duzib128G2037 Durio zibethinus
Duzib187G1706 Durio zibethinus
ECA236G1117 Erigeron canadensis
ECA240G0989 Erigeron canadensis
ECA247G3776 Erigeron canadensis
EL10Ac5g11892 Beta vulgaris
EL10Ac5g12552 Beta vulgaris
Eucgr.A00520 Eucalyptus grandis
Eucgr.E01205 Eucalyptus grandis
FAN02G0999 Fragaria x ananassa
FAN04G0332 Fragaria x ananassa
FAN05G5199 Fragaria x ananassa
FAN08G3570 Fragaria x ananassa
FAN09G1724 Fragaria x ananassa
FAN14G0782 Fragaria x ananassa
FAN14G3717 Fragaria x ananassa
FAN18G1735 Fragaria x ananassa
FvH4_5g24280 Fragaria vesca
FvH4_6g11330 Fragaria vesca
Glyma.01G121000 Glycine max
Glyma.01G150500 Glycine max
Glyma.03G056900 Glycine max
Glyma.07G151100 Glycine max
Glyma.18G202400 Glycine max
Gohir.A01G226800 Gossypium hirsutum
Gohir.A04G091800 Gossypium hirsutum
Gohir.A08G146500 Gossypium hirsutum
Gohir.A09G165700 Gossypium hirsutum
Gohir.D01G216600 Gossypium hirsutum
Gohir.D04G131000 Gossypium hirsutum
Gohir.D08G167600 Gossypium hirsutum
Gohir.D09G161250 Gossypium hirsutum
Gohir.D09G161300 Gossypium hirsutum
Gorai.002G262900 Gossypium raimondii
Gorai.004G174900 Gossypium raimondii
Gorai.006G183000 Gossypium raimondii
Gorai.012G114700 Gossypium raimondii
GSVIVG01011168001 Vitis vinifera
GSVIVG01036939001 Vitis vinifera
HanXRQChr03g0082381 Helianthus annuus
HanXRQChr08g0228661 Helianthus annuus
HanXRQChr10g0294011 Helianthus annuus
HanXRQChr11g0331761 Helianthus annuus
Haze_08002 Corylus avellana
Haze_21013 Corylus avellana
Hma1.2p1_0362F.1_g136370 Hydrangea macrophylla
Hma1.2p1_0479F.1_g161370 Hydrangea macrophylla
Hma1.2p1_1000F.1_g246470 Hydrangea macrophylla
Hma1.2p1_1256F.1_g270700 Hydrangea macrophylla
Hma1.2p1_1256F.1_g270710 Hydrangea macrophylla
HPP92_007124 Vanilla planifolia
HPP92_025095 Vanilla planifolia
Hund14290 Selenicereus undatus
Hund14320 Selenicereus undatus
Lalb_Chr09g0325171 Lupinus albus
Lalb_Chr12g0206991 Lupinus albus
Lj1g0024461 Lotus japonicus
Lj2A73T35 Lonicera japonica
Lj2g0013596 Lotus japonicus
Lj3C952T8 Lonicera japonica
Lj3g0000201 Lotus japonicus
Lj8P407T6 Lonicera japonica
Lsat_1_v5_gn_5_149380 Lactuca sativa
Lsat_1_v5_gn_5_61301 Lactuca sativa
Lsat_1_v5_gn_8_101700 Lactuca sativa
Lsat_1_v5_gn_9_35421 Lactuca sativa
Manes.08G092900 Manihot esculenta
Manes.09G106100 Manihot esculenta
Manes.17G004700 Manihot esculenta
Mapoly0159s0017 Marchantia polymorpha
MBI03_g31838_MAGBIO Magnolia biondii
MBI04_g30772_MAGBIO Magnolia biondii
MD04G1154600 Malus domestica
MD06G1021000 Malus domestica
MD12G1168300 Malus domestica
Medtr4g015680 Medicago truncatula
Medtr5g026540 Medicago truncatula
Medtr7g068770 Medicago truncatula
MELO3C009160.2 Cucumis melo
MELO3C016254.2 Cucumis melo
MELO3C025995.2 Cucumis melo
Migut.E01394 Erythranthe guttata
Migut.J00154 Erythranthe guttata
Migut.L02020 Erythranthe guttata
MSTRG.13925 Avicennia marina
MSTRG.1745 Avicennia marina
MSTRG.19007 Avicennia marina
MSTRG.26815 Avicennia marina
Nitab4.5_0000121g0210 Nicotiana tabacum
Nitab4.5_0000490g0020 Nicotiana tabacum
Nitab4.5_0000770g0010 Nicotiana tabacum
Nitab4.5_0000860g0010 Nicotiana tabacum
Nitab4.5_0007276g0010 Nicotiana tabacum
Nitab4.5_0007414g0020 Nicotiana tabacum
Nitab4.5_0008438g0050 Nicotiana tabacum
Nn1g09145 Nelumbo nucifera
Nn2g10859 Nelumbo nucifera
Nn2g13144 Nelumbo nucifera
Nn3g19215 Nelumbo nucifera
Oeu033589.1 Olea europaea
Oeu034561.1 Olea europaea
Oeu057145.1 Olea europaea
Oeu063400.1 Olea europaea
Os02g0702100 Oryza sativa ssp. japonica
Os04g0602300 Oryza sativa ssp. japonica
Os05g0128000 Oryza sativa ssp. japonica
Peaxi162Scf00045g01332 Petunia axillaris
Peaxi162Scf00141g01428 Petunia axillaris
PGR031G1783 Punica granatum
PGR042G0760 Punica granatum
PGSC0003DMG400004470 Solanum tuberosum
PGSC0003DMG400030246 Solanum tuberosum
Phvul.002G126400 Phaseolus vulgaris
Phvul.008G098300 Phaseolus vulgaris
Phvul.010G000200 Phaseolus vulgaris
Potri.001G129900 Populus trichocarpa
Potri.003G104500 Populus trichocarpa
Potri.006G101400 Populus trichocarpa
Potri.016G117300 Populus trichocarpa
Pp3c19_12480 Physcomitrium patens
Pp3c19_12520 Physcomitrium patens
Pp3c22_17830 Physcomitrium patens
Pp3c22_17940 Physcomitrium patens
Pp3c22_23130 Physcomitrium patens
Pp3c8_20710 Physcomitrium patens
Prupe.5G017700 Prunus persica
Prupe.6G278600 Prunus persica
Psat2g143320 Pisum sativum
Psat3g128400 Pisum sativum
Psat7g245640 Pisum sativum
QL07p035444 Quercus lobata
RcHm_v2.0_Chr3g0462911 Rosa chinensis
RcHm_v2.0_Chr7g0214511 Rosa chinensis
Rhsim05G0216700 Rhododendron simsii
Sabra01G0100400 Salix brachista
Sabra06G0078100 Salix brachista
Sabra16G0113400 Salix brachista
Sc01g0006380 Simmondsia chinensis
Sc07g0008290 Simmondsia chinensis
Sed0019467 Sechium edule
Sed0020312 Sechium edule
Sed0020330 Sechium edule
Sed0021500 Sechium edule
SEGI_03721 Sequoiadendron giganteum
SEGI_05864 Sequoiadendron giganteum
SEGI_11693 Sequoiadendron giganteum
SEGI_25031 Sequoiadendron giganteum
SEGI_40062 Sequoiadendron giganteum
SGA_v2.0_scaffold85G26725 Striga asiatica
SMO134G0042 Selaginella moellendorffii
SMO142G0045 Selaginella moellendorffii
SMO358G0437 Selaginella moellendorffii
Solyc08g005900.4 Solanum lycopersicum
Solyc09g005560.4 Solanum lycopersicum
Sopen00g007720 Solanum pennellii
Sopen08g001870 Solanum pennellii
Sopen09g001470 Solanum pennellii
Sp4g20540 Schrenkiella parvula
Sp6g40690 Schrenkiella parvula
TAR369G0253 Trochodendron aralioides
TAR623G0539 Trochodendron aralioides
TAR633G1833 Trochodendron aralioides
TAR636G0064 Trochodendron aralioides
THA.LOC104823293 Tarenaya hassleriana
THA.LOC104823379 Tarenaya hassleriana
Thecc.03G324600 Theobroma cacao
Thecc.05G014800 Theobroma cacao
Thhalv10015815m.g Eutrema salsugineum
TPR.G13345 Trifolium pratense
TPR.G17241 Trifolium pratense
TPR.G8410 Trifolium pratense
TWI34G1613 Tripterygium wilfordii
TWI74G1403 Tripterygium wilfordii
TWI77G1004 Tripterygium wilfordii
unitig_26.g9087 Utricularia gibba
unitig_699.g19380 Utricularia gibba
unitig_736.g22734 Utricularia gibba
unitig_899.g14731 Utricularia gibba
vmacro08881 Vaccinium macrocarpon
vmacro20288 Vaccinium macrocarpon
VMungo0331G0850 Vigna mungo
VMungo1215G1634 Vigna mungo
VMungo1383G1596 Vigna mungo
Zm00001eb071780 Zea mays
Zm00001eb251890 Zea mays

User provided reference genes

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