Gene: AT5G01380
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G01380
- Transcript Identifier AT5G01380.1
- Gene Type Coding gene
- Location Chr5 : 155784-157451 : negative
Gene Family Information
- ID HOM05D002384
- #Genes/#Species 285/93
- Phylogenetic origin
- ID ORTHO05D002498
- #Genes/#Species 284/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G01380.1
- uniprot Q9SDW0
Descriptions
- Description Homeodomain-like superfamily protein
- Computational description Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G38250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | TAS | Gene Ontology | regulation of transcription, DNA-templated | 1 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043565 | IEA | GOA Database | sequence-specific DNA binding | |
| GO:0043565 | IDA | Gene Ontology | sequence-specific DNA binding | 2 |
| GO:0043565 | IEA | InterPro | sequence-specific DNA binding | |
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 1 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 3 |
| GO:0042802 | IPI | Gene Ontology | identical protein binding | 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 2 |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.20 | RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix) |